Locus 3451

Sequence ID 3R_DroMel_CAF1
Location 9,348,575 – 9,348,671
Length 96
Max. P 0.961238
window5538

overview

Window 8

Location 9,348,575 – 9,348,671
Length 96
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 86.19
Mean single sequence MFE -32.27
Consensus MFE -24.12
Energy contribution -24.50
Covariance contribution 0.38
Combinations/Pair 1.10
Mean z-score -2.60
Structure conservation index 0.75
SVM decision value 1.52
SVM RNA-class probability 0.961238
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9348575 96 - 27905053
GCUGGGAAAUGGGAGAGCGAAAGCGUCGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGCCGGUGGUGAGG------------CAAACGGUAGCGGUAGC------GGUAG
((((............((....))(((...(..(((((.(....((((......))))..).)))))..)..))------------)...)))).((....))------..... ( -29.70)
>DroSec_CAF1 118018 96 - 1
GCUGGGAAAUGGGAGCGCGAAAGCGUCGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGCCGGUGGUGAGG------------CAAACGGUAGCGGUAGC------GGUAG
.((.((........((((....))))........)).)).....((((......))))..(((((.((.((..(------------(.....))..)).)).)------)))). ( -32.19)
>DroSim_CAF1 129271 96 - 1
GCUGGGAAAUGGGAGCGCGAAAGCGUCGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGCCGGUAGUGAGG------------CAAACGGUAGCGGUAGC------GGUAG
.((.((........((((....))))........)).)).....((((......))))..(((((.((.((..(------------(.....))..)).)).)------)))). ( -32.49)
>DroYak_CAF1 119338 114 - 1
ACUGGGAAAUGGGAGCGCGAAAGCGUUGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGGCGGUGGCAUGGGCAUGGGCAUGGGCAACGGUAGCGGUAGCGGUAGCAGUAG
((((.........(((((....)))))......((((..(....((((......)))).(((.(.(((.(...).))).).)))...)..)))).((....)).....)))).. ( -34.70)
>consensus
GCUGGGAAAUGGGAGCGCGAAAGCGUCGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGCCGGUGGUGAGG____________CAAACGGUAGCGGUAGC______GGUAG
.((.((........((((....))))........)).)).....((((......))))..(((((.((.((...................)).)).)))))............. (-24.12 = -24.50 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:19 2006