Locus 3448

Sequence ID 3R_DroMel_CAF1
Location 9,339,474 – 9,339,565
Length 91
Max. P 0.793983
window5535

overview

Window 5

Location 9,339,474 – 9,339,565
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 83.42
Mean single sequence MFE -26.10
Consensus MFE -19.30
Energy contribution -19.97
Covariance contribution 0.67
Combinations/Pair 1.15
Mean z-score -2.44
Structure conservation index 0.74
SVM decision value 0.60
SVM RNA-class probability 0.793983
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9339474 91 - 27905053
-UUUUUC-GC--CCGCCAAUU--UAUUCGUAGCAUGGCGGCAAUAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA
-......-((--(.((((..(--((....)))..)))))))......((((..((((((.......(((((....)))))...))))))..)).)). ( -26.60)
>DroPse_CAF1 107695 88 - 1
CUUU--G-GCAUUCGGCAUUGGGCAUU--GGGCAUGGGG----AAAACCCGUACAAGUGAAAAAUCGCCAUGAAAAUGGCAAACGCUUGGCCAUGUA
((..--.-((.....))...))((((.--.((((((((.----....))))).((((((.......(((((....)))))...))))))))))))). ( -28.70)
>DroSec_CAF1 111685 92 - 1
-UUUUUCGGC--CGGCCAAUU--UAUUCGUAGCAUGGCGGCACAAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUCGCAAGCGCUUGGCCAUGUA
-......(((--((((.....--.........((((((((.......(((.....)))......)))))))).....(....).)).)))))..... ( -25.42)
>DroEre_CAF1 111504 89 - 1
-UUU--C-GC--UCGCCAAUU--UAUUCCUAGCAUGGCGUCACAAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA
-...--.-..--.........--........(((((((.(((.......))).((((((.......(((((....)))))...))))))))))))). ( -26.00)
>DroYak_CAF1 112679 89 - 1
-UUU--C-GC--UCGCCAAUU--UAUUCCUAGCAUGGCAGCACAAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA
-...--.-..--.........--........(((((((....((.....))..((((((.......(((((....)))))...))))))))))))). ( -25.30)
>DroAna_CAF1 107564 87 - 1
-UUC--G-GC--UUGCCAAUU--UAUUCGGUUCGCAGCAG--CAAAAACUGUACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA
-...--(-((--.(((.((((--.....)))).)))((((--......)))).((((((.......(((((....)))))...)))))))))..... ( -24.60)
>consensus
_UUU__C_GC__UCGCCAAUU__UAUUCGUAGCAUGGCGGCACAAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA
...............................(((((((((........))...((((((.......(((((....)))))...))))))))))))). (-19.30 = -19.97 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:16 2006