Locus 3447

Sequence ID	3R_DroMel_CAF1
Location	9,337,101 – 9,337,197
Length	96
Max. P	0.898771

overview

Window 4

Location	9,337,101 – 9,337,197
Length	96
Sequences	3
Columns	98
Reading direction	forward
Mean pairwise identity	77.78
Mean single sequence MFE	-23.05
Consensus MFE	-13.57
Energy contribution	-13.90
Covariance contribution	0.33
Combinations/Pair	1.00
Mean z-score	-2.24
Structure conservation index	0.59
SVM decision value	1.00
SVM RNA-class probability	0.898771
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9337101 96 + 27905053
CUGGCCGAAAGGCACCGAGCGUCAAGACAAAUUGUUGCAGCAGCUGCAUGUUGAGCCAAUAAACAAAGCCAAAAGCACAACAGUAGCACAGCAC--CA
((((((....))).....(((.(((......))).)))....(((((.(((((.((..................)).)))))))))).)))...--.. ( -27.07)
>DroYak_CAF1 110257 85 + 1
CUGGCCGAAAGGCACCGAGCGUCAAGACAAAUUGUUGCAGCAGCUGCAUGUUGAGCCAAUAAACAAAGCCAAAAGCACAAC-------------AGCA
((((((....))).....(((.(((......))).)))..)))..((.(((((.((..................)).))))-------------))). ( -21.37)
>DroAna_CAF1 105357 74 + 1
CUGGCCGAGAGGCA--GGACGGCAAGACAAAUUGUUGCAGCAGCUGCAUGUUAUGCCAAUAAACAAAGCCAAAAGG----------------------
((.(((....))).--))..((((.((((...(((.((....)).))))))).))))...................---------------------- ( -20.70)
>consensus
CUGGCCGAAAGGCACCGAGCGUCAAGACAAAUUGUUGCAGCAGCUGCAUGUUGAGCCAAUAAACAAAGCCAAAAGCACAAC_______________CA
...(((....)))..................((((((...((((.....))))...)))))).................................... (-13.57 = -13.90 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:15 2006