Locus 3444

Sequence ID 3R_DroMel_CAF1
Location 9,334,329 – 9,334,442
Length 113
Max. P 0.788226
window5529

overview

Window 9

Location 9,334,329 – 9,334,442
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.16
Mean single sequence MFE -25.73
Consensus MFE -24.67
Energy contribution -24.00
Covariance contribution -0.66
Combinations/Pair 1.13
Mean z-score -0.95
Structure conservation index 0.96
SVM decision value 0.58
SVM RNA-class probability 0.788226
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9334329 113 + 27905053
CGACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU-------GUUUGAAUUUGUUGAAGCAUGUUCGAGUG
.((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((.........)-------))..))))).))))))))))))))..... ( -26.90)
>DroPse_CAF1 102919 120 + 1
CAACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAGUUUUUGCAUAUUUUAUCUGUUUUCUGUUUGAAUUUGUUGAAGCAUGUUCGAGUG
.((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((................)))..))))).))))))))))))))..... ( -25.89)
>DroWil_CAF1 105214 113 + 1
CAACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU-------GUUUGAAUUUGUUGAAGCAUGUUUGAGUG
.((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((.........)-------))..))))).))))))))))))))..... ( -24.30)
>DroYak_CAF1 106815 113 + 1
CGACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU-------GUUUGAAUUUGUUGAAGCAUGUUCGAGUG
.((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((.........)-------))..))))).))))))))))))))..... ( -26.90)
>DroAna_CAF1 102721 113 + 1
CGACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU-------GUUUGAAUUUGUUGAAGCAUGUUCGAGUA
.((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((.........)-------))..))))).))))))))))))))..... ( -26.90)
>DroPer_CAF1 107685 120 + 1
CAACAUGAGCUUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCUGUUUUCUGUUUGAAUUUGUUGAAGCAUGUUCGAGUG
.((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((................)))..))))).))))))))))))))..... ( -23.49)
>consensus
CAACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU_______GUUUGAAUUUGUUGAAGCAUGUUCGAGUG
.((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..((..................))..))))).))))))))))))))..... (-24.67 = -24.00 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:11 2006