Locus 3438

Sequence ID 3R_DroMel_CAF1
Location 9,326,047 – 9,326,148
Length 101
Max. P 0.896136
window5516

overview

Window 6

Location 9,326,047 – 9,326,148
Length 101
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 83.13
Mean single sequence MFE -14.73
Consensus MFE -12.13
Energy contribution -12.47
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.09
Structure conservation index 0.82
SVM decision value 0.99
SVM RNA-class probability 0.896136
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9326047 101 + 27905053
ACAACAAGCUGAGUUAUGAGUUGGCAUAUGACUUUCAUUUUGAAAACCAACACACACACACACACACCCACUCUCCAACCAACGAGCACUCACACAGCAAC------------
.......((((.((..((.(((((((.(((.....)))..))....))))).))..................(((........))).....)).))))...------------ ( -12.90)
>DroSec_CAF1 96851 107 + 1
ACAACAAGCUGAGUUAUGAGUUGGCAUAUGACUUUCAUUUUGAAAACCAACACAC------ACACACUCACUCUCCAGCCAACGAGCACUCACACACCAACACAGCCACACAC
.......((((.(((.((.((((((..(((.....))).(((.....))).....------................))))))((....))...))..))).))))....... ( -16.90)
>DroSim_CAF1 99132 93 + 1
ACAACAAGCUGAGUUAUGAGUUGGCAUAUGACUUUCAUUUUGAAAACCAACACACACA--CACACACUCACUCUCCAGCCAACGAGCACUCACA------------------C
.......(.(((((.....((((((..(((.....))).(((.....)))........--.................))))))....)))))).------------------. ( -14.40)
>consensus
ACAACAAGCUGAGUUAUGAGUUGGCAUAUGACUUUCAUUUUGAAAACCAACACACACA__CACACACUCACUCUCCAGCCAACGAGCACUCACACA_CAAC___________C
.......(.(((((.....((((((..(((.....))).(((.....)))...........................))))))....)))))).................... (-12.13 = -12.47 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:59 2006