Locus 3437

Sequence ID 3R_DroMel_CAF1
Location 9,325,469 – 9,325,569
Length 100
Max. P 0.828736
window5515

overview

Window 5

Location 9,325,469 – 9,325,569
Length 100
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 84.63
Mean single sequence MFE -32.20
Consensus MFE -23.47
Energy contribution -23.55
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -3.17
Structure conservation index 0.73
SVM decision value 0.71
SVM RNA-class probability 0.828736
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9325469 100 - 27905053
UUUUCGGUGCUUAUUUGUUCGCCGGUUC--GCCUGCUUUUCGUAC------UUUAUUGCCCGGGCAGUAACAA---------UGAAAGCGUCUAAAUAAGCAUUGACUUGAAAAUAC
...((((((((((((((..(((.((...--.))....((((((..------.(((((((....)))))))..)---------))))))))..))))))))))))))........... ( -33.20)
>DroPse_CAF1 93259 108 - 1
UUUUCGGUGCUUAUUUGUACGUUUGUUU---CCUCCUCCACGUAC------UUUAUUGCCAUAGCAGUAACAAGGAGGGCAAGGAAAGCGUCUAAAUAAGCAUUGACUUGAAAAUAC
...((((((((((((((.((((...(((---((((((((..((..------..((((((....))))))))..)))))...)))))))))).))))))))))))))........... ( -38.00)
>DroSim_CAF1 98559 100 - 1
UUUUCGGUGCUUAUUUGUUCGUCGGUUC--GCCUGCUUCAAGUAC------UUUAUUGCCCGGGCAGUAACAA---------UGAAAGCGUCUAAAUAAGCAUUGACUUGAAAAUAC
...((((((((((((((..(...((...--.)).((((((.....------.(((((((....)))))))...---------)).)))))..))))))))))))))........... ( -28.10)
>DroEre_CAF1 97826 102 - 1
UUUUCGGUGCUUAUUUGUUCGUCGGUUCACGCCAGCUUCACGUAC------UUUAUUGCCCGGGCAGUAACAA---------UGAAAGCGUCUAAAUAAGCAUUGACUUGAAAAUAC
...((((((((((((((..(...(((....))).((((..(((..------.(((((((....)))))))..)---------)).)))))..))))))))))))))........... ( -30.00)
>DroAna_CAF1 94337 105 - 1
UUUUCGGUGCUUAUUUGUUUGUCGGUU---GCCUGCUUCACGUACUCGCGCUUUAUUGCCAGGCCAGUAACAA---------UGAAAGCGUCUAAAUAAGCAUUGACUUGAAAAUAC
...((((((((((((((..(((..(((---((..((((..((....)).((......)).))))..)))))..---------.....)))..))))))))))))))........... ( -24.70)
>DroPer_CAF1 97010 108 - 1
UUUUCGGUGCUUAUUUGUACGUUUGCUU---CCUCCUCCACGUAC------UUUAUUGCCAUAGCAGUAGCAAGGAGGGCAAGGAAAGCGUCUAAAUAAGCAUUGACUUGAAAAUAC
...((((((((((((((.((((((.(((---..((((((..((..------..((((((....))))))))..))))))..))).)))))).))))))))))))))........... ( -39.20)
>consensus
UUUUCGGUGCUUAUUUGUUCGUCGGUUC__GCCUGCUUCACGUAC______UUUAUUGCCAGGGCAGUAACAA_________UGAAAGCGUCUAAAUAAGCAUUGACUUGAAAAUAC
...((((((((((((((..(((.((......))...................(((((((....))))))).................)))..))))))))))))))........... (-23.47 = -23.55 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:58 2006