Locus 3432

Sequence ID 3R_DroMel_CAF1
Location 9,312,107 – 9,312,208
Length 101
Max. P 0.561481
window5508

overview

Window 8

Location 9,312,107 – 9,312,208
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.35
Mean single sequence MFE -38.03
Consensus MFE -23.91
Energy contribution -25.85
Covariance contribution 1.94
Combinations/Pair 1.06
Mean z-score -1.87
Structure conservation index 0.63
SVM decision value 0.06
SVM RNA-class probability 0.561481
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9312107 101 + 27905053
---AUGGUUAGAUGGG----------------AUGGAAAUCCGCAGCGUUGUGGGCCAGACUAACUGGCAGGCGGACUGGCAGGCGCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA
---..((((((.((((----------------(.((....))..((((((((..(((((.....)))))..)).((((((((........)))))))).))))))))))))))))).... ( -35.40)
>DroSec_CAF1 83313 104 + 1
UAGGUGGUUAGAUGGA----------------AUGGAAGUCCGCAGCGUUGUGGGCCCGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA
.....((((((.((((----------------((((..((((((......))))))))).((((((((((..(((...((....))))).)))))))))).....))))))))))).... ( -36.60)
>DroSim_CAF1 84663 104 + 1
UAGGUGGUUAGAUGGG----------------AUGGAAGUCCGCAGCGUUGUGGGCCCGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA
..(((((..((.....----------------.(((..((((((......))))))))).((((((((((..(((...((....))))).))))))))))...))..)))))........ ( -36.40)
>DroEre_CAF1 84114 104 + 1
UAGGUGGGUAAGUGGG----------------AAGGAAAUCCGCAGCGAUGUGGGCCAGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA
....((((..((((((----------------(((.(..((((((....)))))).....((((((((((..(((...((....))))).)))))))))).).)))))))))...)))). ( -37.30)
>DroYak_CAF1 84256 104 + 1
UUGGUGGAUAGGUGGA----------------AUGGAAAUCCGCAGCGUUGUGGGCCAGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA
(..(((((...(((((----------------.(....))))))((((((((..(((((.....)))))..)).((((((((........)))))))).)))))).)))))..)...... ( -40.70)
>DroPer_CAF1 83191 111 + 1
-------UCAGAGCGAACAGUCGAACGGCCGAACGG--CCCAGCAGCCCAGGCUGCCAGCCAAACUGGCAGGCGCUCUGGCAGGCCCUGAUGUCAGUCAGAUGCUUUCCACUGAUUUUAA
-------..((((((...........((((....))--))..(((((....)))))..(((.....)))...))))))((.((((.(((((....)))))..)))).))........... ( -41.80)
>consensus
UAGGUGGUUAGAUGGA________________AUGGAAAUCCGCAGCGUUGUGGGCCAGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA
.....((((((.((((........................((((......))))(((((.....)))))(((((((((((((........))))))))...))))))))))))))).... (-23.91 = -25.85 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:51 2006