| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,311,390 – 9,311,506 |
| Length | 116 |
| Max. P | 0.759346 |
| Location | 9,311,390 – 9,311,506 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.00 |
| Mean single sequence MFE | -37.65 |
| Consensus MFE | -29.63 |
| Energy contribution | -30.22 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.759346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9311390 116 - 27905053 AACC-UUUAGUGCCACUCCAAUUCUCGACGUGUGCUUAGUUG---UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ....-.....(((((((.((((...((((.........))))---..))))..)))))))......(((((((((((.(.((((.....(....).....)))).).))))))))))).. ( -39.00) >DroSec_CAF1 82610 116 - 1 AACC-UUUAGUGCCACUCCAAUUCUCGACGUGUGCUUAGUUG---UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ....-.....(((((((.((((...((((.........))))---..))))..)))))))......(((((((((((.(.((((.....(....).....)))).).))))))))))).. ( -39.00) >DroSim_CAF1 83967 116 - 1 AACC-UUUAGUGCCACUCCGAUUCUCGACGUGUGCUUAGUUG---UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ....-.....(((((((.((((...((((.........))))---..))))..)))))))......(((((((((((.(.((((.....(....).....)))).).))))))))))).. ( -38.70) >DroEre_CAF1 83477 114 - 1 AACCCUGUCCUGCCACUCGAAUUCUCGACGUGUGCUUAGUUG---UUAUUGUUGGUGGCAACAACAGC---AGCAUUGCAAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ...........(((((((((....)))).))).))...((((---((((.....))))))))..((((---((((((...((((.....(....).....))))...))))))))))... ( -33.90) >DroYak_CAF1 83583 117 - 1 AACCCUGUUCCGCCACUCCAAUUCUCGACGUGUGCCGAGUUG---UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC .....((((((((((...((((.((((........))))...---..)))).)))))).))))...(((((((((((.(.((((.....(....).....)))).).))))))))))).. ( -40.10) >DroAna_CAF1 81016 110 - 1 --------GCUGGCAGUGUAGUUUGUAGAGU-AGCUGUGUUGUUUUUGCUGCUGGUGGCAG-AACUACAGCAGCAUCUCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC --------....(((.((((((((((..(((-(((............))))))....))))-.))))))(((((((.((.((((.....(....).....)))).)).)))))))))).. ( -35.20) >consensus AACC_UUUACUGCCACUCCAAUUCUCGACGUGUGCUUAGUUG___UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ..........(((((((.((((...((((.........)))).....))))..)))))))......(((((((((((.(.((((.....(....).....)))).).))))))))))).. (-29.63 = -30.22 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:50 2006