Locus 3430

Sequence ID 3R_DroMel_CAF1
Location 9,307,977 – 9,308,079
Length 102
Max. P 0.592785
window5506

overview

Window 6

Location 9,307,977 – 9,308,079
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.95
Mean single sequence MFE -28.66
Consensus MFE -19.25
Energy contribution -19.76
Covariance contribution 0.50
Combinations/Pair 1.20
Mean z-score -1.61
Structure conservation index 0.67
SVM decision value 0.12
SVM RNA-class probability 0.592785
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9307977 102 - 27905053
CUGC-----UGGCCACCCGGCGGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGUGUUGUGGCCAUAACUACAGUAU----CGGA-UGUA--CCAG----UGG-A-
(..(-----(((.((.(((((((((((....((((((................))))))..)))))))).((((((......))))))...----))).-))..--))))----..)-.- ( -26.69)
>DroPse_CAF1 76389 106 - 1
UUGC-----UGGCCACCCGGCGGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAGUAU----CGGG-CUGU--CCAGAG--UUGGAA
....-----(((((((...((((((((....((((((................))))))..))))))))...)))))))((((((((((..----...)-))))--....))--)))... ( -29.69)
>DroWil_CAF1 78611 101 - 1
C---------GGCCGCCCAGUUUCGAACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAUUUUGUAAAUGG-UGUA--G-AA----UGG-G-
.---------((((((...((..((((....((((((................)))))).))).)..))...))))))....(((((((........))-))))--)-..----...-.- ( -19.79)
>DroYak_CAF1 79987 102 - 1
CUGC-----UGGCCACCCGGCGGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGAGCUGUGGCCAUAACUACAGUAU----CGGA-UGUA--CCAG----UGG-A-
(..(-----(((.((.(((((((((((....((((((................))))))..))))))).(((((((......))))))).)----))).-))..--))))----..)-.- ( -29.49)
>DroAna_CAF1 77960 114 - 1
UUGCUGGGCUGGCCAACCGGCGGCUGACUUUUAAAUAAACCAUAAAACAACACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAGUAU----CAGUCUGGAGCCCAGAGUCCGG-A-
...((((((((((((....((((((((....((((((................))))))..))))))))....))))).......(((...----....))).))))))).......-.- ( -36.09)
>DroPer_CAF1 79654 103 - 1
UUGC-----UGGCCACCCGGCAGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAGUAU----CGGG-CUGU--CCAGAG--UUG---
...(-----(((.((((((((((((((....((((((................))))))..)))))))).((((((......))))))...----))))-.)).--))))..--...--- ( -30.19)
>consensus
CUGC_____UGGCCACCCGGCGGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAGUAU____CGGG_UGGA__CCAG____UGG_A_
..........((((((...((((((((....((((((................))))))..))))))))...)))))).......................................... (-19.25 = -19.76 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:49 2006