Locus 343

Sequence ID 3R_DroMel_CAF1
Location 1,321,918 – 1,322,035
Length 117
Max. P 0.914748
window569

overview

Window 9

Location 1,321,918 – 1,322,035
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 87.11
Mean single sequence MFE -29.90
Consensus MFE -22.42
Energy contribution -22.20
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -3.05
Structure conservation index 0.75
SVM decision value 1.10
SVM RNA-class probability 0.914748
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1321918 117 + 27905053
---ACGAUUGAUUUCAGAACUGCCAAGAACUGGAAAUGGUUUUUGGCUGUCCAAUUAAUUUUGAUCUUAAUUGAUUAAAAGUGAGGAAUAAUCUAUCGCUUAGCCGGCGCUUAUCAAAAU
---..(((((.((((.(.((.((((((((((......)))))))))).)).)..(((.((((((((......)))))))).))))))))))))...((((.....))))........... ( -29.40)
>DroSec_CAF1 10589 109 + 1
AAGAGGUUCGACUUUAAAACUGCCAAGAACUGGAAAUGGUUUUUGGCUGUCCAAUUAAUCUUGAUCUUAAUUGAUUAAAAGUGAGGAAUAAUCUAUCGC-----------UUAUCAAAAU
..(((((.(((..((((.((.((((((((((......)))))))))).))....))))..))))))))..(((((...(((((((((....))).))))-----------)))))))... ( -27.20)
>DroSim_CAF1 11645 109 + 1
GAGAGGUUCGACUUUAAAACUGCCAAGAACUGGAAACGGUUUUUGGCUGUCCAAUUAAUCUUGAUCUUAAUUGAUUAAAAGUGAGGAAUAAUCUAUCGC-----------UUAUCAAAAU
..(((((.(((..((((.((.(((((((((((....))))))))))).))....))))..))))))))..(((((...(((((((((....))).))))-----------)))))))... ( -33.10)
>consensus
_AGAGGUUCGACUUUAAAACUGCCAAGAACUGGAAAUGGUUUUUGGCUGUCCAAUUAAUCUUGAUCUUAAUUGAUUAAAAGUGAGGAAUAAUCUAUCGC___________UUAUCAAAAU
..................((.(((((((((((....))))))))))).))..........((((((......))))))..(((((((....))).))))..................... (-22.42 = -22.20 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:50 2006