Locus 3426

Sequence ID 3R_DroMel_CAF1
Location 9,302,974 – 9,303,066
Length 92
Max. P 0.829027
window5496

overview

Window 6

Location 9,302,974 – 9,303,066
Length 92
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.02
Mean single sequence MFE -23.27
Consensus MFE -15.82
Energy contribution -16.02
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -2.39
Structure conservation index 0.68
SVM decision value 0.71
SVM RNA-class probability 0.829027
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9302974 92 - 27905053
UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC-CCUCAGCAC-----AAUCCCACUAUUUCGCACUACUCCC-CCAGCUGGAUGCACCA
(((((((..(((.(.(((((((((......))))))))).))-))))))).)-----).............((((((((...-..)).))).))).... ( -23.40)
>DroSec_CAF1 74172 92 - 1
UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCCCCCUCAGCAC-----AAUCCCACUAUUUCGCACCACUCC--CCACCAGGCUGCACCA
(((((((..(((.(.(((((((((......)))))))))))))..))))).)-----).............(((((.....--......)).))).... ( -24.90)
>DroSim_CAF1 75487 94 - 1
UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCCCCCUCAGCAC-----AAUCCCACUAUUUCGCACCACUCCCCCCACCAGGCUGCACCA
(((((((..(((.(.(((((((((......)))))))))))))..))))).)-----).............(((((.............)).))).... ( -24.72)
>DroEre_CAF1 74967 84 - 1
UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC-CCUCAGCAC-----AAGACCACUAUUCCCCAC---------CACCAAGCUGCACCA
(((((((..(((.(.(((((((((......))))))))).))-))))))).)-----).................---------............... ( -19.40)
>DroYak_CAF1 74868 84 - 1
UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC-CCUCAGCAC-----AAACACACUAUUCCCCAA---------CACCAGGCUGCACCA
(((((((..(((.(.(((((((((......))))))))).))-))))))).)-----).................---------.....((.....)). ( -20.10)
>DroAna_CAF1 73094 94 - 1
UGGUUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC-CCAAAGCGCCCAAGAAACCCACUGUAUA----UACCCCCGUUCUAAGGGUGCACCA
.(((.....(((.(.(((((((((......))))))))).))-))...((((((.((((.......((...----.)).....))))..))))))))). ( -27.10)
>consensus
UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC_CCUCAGCAC_____AAUCCCACUAUUUCGCAC_ACUCC__CCACCAGGCUGCACCA
..(((((..(((...(((((((((......))))))))))))...)))))................................................. (-15.82 = -16.02 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:40 2006