| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,300,225 – 9,300,320 |
| Length | 95 |
| Max. P | 0.544095 |
| Location | 9,300,225 – 9,300,320 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.94 |
| Mean single sequence MFE | -24.28 |
| Consensus MFE | -18.27 |
| Energy contribution | -18.38 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9300225 95 - 27905053 G----------------AAAAAAAAAGGGA------UGGGAUGGGAAAAUGGGGCAGUUGCAACUGCUGCAUUGCAAUUGACGGCGAUUAUCGCGGCGAAAAUAGUUUUGUUUGUUC .----------------.......((.(((------(..(((.....((((.((((((....)))))).))))....(((.(.(((.....))).)))).....)))..)))).)). ( -23.40) >DroSec_CAF1 71362 105 - 1 GGGGA------------AAAAAAGAAGGGAAAGCGGAGGAAUGGGAAAAUGGGGCAGUUGCAACUGCUGCAUUGCAAUUGACGGCGAUUAUCGCGGCGAAAAUAGUUUUGUUUGUUC .....------------.................(((.((((..((.((((.((((((....)))))).))))....(((.(.(((.....))).))))......))..)))).))) ( -24.70) >DroSim_CAF1 72739 105 - 1 GGGGA------------AAAAAAGAAGGGAAAGCGGAGGGAUAGGAAAAUGGGGCAGUUGCAACUGCUGCAUUGCAAUUGACGGCGAUUAUCGCGGCGAAAAUAGUUUUGUUUGUUC .....------------.................(((.((((((((.((((.((((((....)))))).))))....(((.(.(((.....))).))))......)))))))).))) ( -24.80) >DroEre_CAF1 72283 98 - 1 G----------------AAAAUGGGAGGGA---UGGGAAAAUGGGAAAAUGGGGCAGUUGCAACUGCUGCAUUGCAAUUGACGGCGAUUAUCGCGGCGAAAAUAGUUUUGUUUGUUC .----------------......(((.(((---(..((.........((((.((((((....)))))).))))....(((.(.(((.....))).))))......))..)))).))) ( -24.00) >DroYak_CAF1 72258 94 - 1 A----------------AAAAAACGGC-------GGCGGGAUGGGAAAAUGGGGCAGUUGCAACUGCUGCAUUGCAAUUGACGGCGAUUAUCGCGGCGAAAAUAGUUUUGUUUGUUC .----------------..(((((..(-------(.((.(((((...((((.((((((....)))))).))))((........))..))))).)).))......)))))........ ( -26.00) >DroAna_CAF1 70213 104 - 1 GUGGCACUAGGAGUGAGAGAAACCGAGGCA------CAUGGUGAAAGUAAGGGGCAGUU------GCUGCAUUGCAAUUGACGGCGAUUAUCGCGGCAAAAAUAGUUUUGUUUGUU- (((((.((.((..(....)...)).)))).------))).((((.(((......(((((------((......)))))))......))).))))(((((((....)))))))....- ( -22.80) >consensus G________________AAAAAAGAAGGGA____GGAGGGAUGGGAAAAUGGGGCAGUUGCAACUGCUGCAUUGCAAUUGACGGCGAUUAUCGCGGCGAAAAUAGUUUUGUUUGUUC ......................................(((..(((.((((.((((((....)))))).))))....(((.(.(((.....))).))))......)))..))).... (-18.27 = -18.38 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:34 2006