Locus 3419

Sequence ID 3R_DroMel_CAF1
Location 9,294,526 – 9,294,618
Length 92
Max. P 0.801845
window5486

overview

Window 6

Location 9,294,526 – 9,294,618
Length 92
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 65.91
Mean single sequence MFE -29.76
Consensus MFE -12.09
Energy contribution -13.87
Covariance contribution 1.78
Combinations/Pair 1.26
Mean z-score -1.78
Structure conservation index 0.41
SVM decision value 0.62
SVM RNA-class probability 0.801845
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9294526 92 + 27905053
UGCCACCAGGAGGAGAUGC---UCUUCCUGGGUUCGCAUCGAUACACUUGAC---GCAAGUAGGUUAAAA---------------------CUUAGAAUUU-AUCUUGCCGCAAGAAGAA
(((..((((((((((...)---)))))))))....)))........((((..---(((((((((((....---------------------.....)))))-).)))))..))))..... ( -30.20)
>DroSec_CAF1 65793 110 + 1
UGCCACCAGGAGGAGAUGC---UCUUCCUGGGUUCGCGUCGGUACACUUGAC---GCAAGUAGGUUAAAAUCAGUCUAGAGUAAUGCAUUACAUGGAAUUU-AUCUUGGCGCAAGAA---
.((((((((((((((...)---)))))))))(((((((((((.....)))))---))..((((((.....((......)).....)).))))...))))..-....)))).......--- ( -36.60)
>DroSim_CAF1 67057 110 + 1
UGCCACCAGGAGGAGAUGC---UCUUCCUGGGUUCGCAUCGGUACACUUGAC---GCAAGUAGGUUAAAAUGUGUCUAGAGUAAUGCAUUACAUGGAAUUU-AUCUUGGCGCAAGAA---
.((((((((((((((...)---)))))))))....((((...(((.((.(((---(((............)))))).)).)))))))..............-....)))).......--- ( -35.30)
>DroEre_CAF1 66592 111 + 1
UGCCACCAGGAGGAGAUGC---UCAUCCUGGGUUCGCAUCGGUACACUUGAA---GCAACUACCUAAAAACCAGUCUAGAAUAAUGCAUUUCUUAGGACUUGGACUUGGUAAAAAAU---
(((((((((((.(((...)---)).))))))(((.((.((((.....)))).---)))))..........(((((((((((........))))..)))).)))...)))))......--- ( -30.10)
>DroYak_CAF1 66443 116 + 1
UGCCACCAGGAGGAGAUGC---UCAUCCUGGGUUCGCCUCGGUACACUUGAGUUCGCAAGUUCGUAAAAAUCUGUCCAAAAUAAUGCAUUACUUAGAACUU-GACUUAGUAUAAAAUCUU
.((..((((((.(((...)---)).))))))....))....((((..(..(((((..((((..(((..................)))...)))).))))).-.)....))))........ ( -23.67)
>DroAna_CAF1 65051 99 + 1
UGUUGUCGCGAGC--UUGCCUUUCUUCCU-----UGUCUCCGUACACUUGC----AAAAUUAUGAUAUA-----UUUAUGGGG----GAGACAAAUAAUUU-AUUUUGCGUACAAUAGAU
((((((((((((.--...).........(-----((((((((((....)))----....((((((....-----.)))))).)----))))))).......-...))))).))))))... ( -22.70)
>consensus
UGCCACCAGGAGGAGAUGC___UCUUCCUGGGUUCGCAUCGGUACACUUGAC___GCAAGUAGGUUAAAAUC_GUCUAGAGUAAUGCAUUACAUAGAAUUU_AUCUUGGCGCAAAAA___
((((((((((((((........)))))))))..............(((((......))))).............................................)))))......... (-12.09 = -13.87 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:31 2006