| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,293,876 – 9,293,967 |
| Length | 91 |
| Max. P | 0.582662 |
| Location | 9,293,876 – 9,293,967 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 81.61 |
| Mean single sequence MFE | -21.32 |
| Consensus MFE | -13.96 |
| Energy contribution | -14.28 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9293876 91 - 27905053 GAUAAAA--AAAGGGAAAAGCUGGGAAAAAUCCAGAGGAGAU--------GGAGGGGGGAGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA .......--..(((......((((((....((((.......)--------)))........)))))).)))((((...((....)).)))).......... ( -19.20) >DroSec_CAF1 65136 99 - 1 GAUAAAA-AAAAGGGAAAAGCUGGGAA-AAUCCAGGGGAGUCGGGGUAUCGGCGGGGGGGGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA .......-............((((...-...)))).((.(((((.((((((.((((.((....))...)))).))))))....))))).)).......... ( -32.50) >DroSim_CAF1 66401 100 - 1 GAUAAAAAAAAAGGGAAAAGCUGGGAA-AAUCCAGGGGAGGAGGGGUAACGGCGGGGGGAGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA ....................((((...-...))))((.(...((.(((.((.((((.((....))...)))).)).)))....))..).)).......... ( -21.60) >DroEre_CAF1 65960 80 - 1 GAUAAA---AAAGGGAAAACCUGGGA--AAUCCGGG----------------GGGGUGAAGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA ......---...........((((((--.((((...----------------.))))....))))))((.(((((...((....)).))))).))...... ( -19.90) >DroYak_CAF1 65793 86 - 1 GAUAAAA--AAAGGGAAAAACUGGAA--AAUUCGGGGG-----------CGGGGGGAGUAGUACUAGACCUGACGAUGCGAAACCGAUGCCAAGUGUAAUA .......--..........(((((..--...((((...-----------((((...((.....))...)))).((...))...))))..)).)))...... ( -13.40) >consensus GAUAAAA__AAAGGGAAAAGCUGGGAA_AAUCCAGGGGAG_________CGGCGGGGGGAGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA ....................((((((....(((.....................)))....))))))((.(((((...((....)).))))).))...... (-13.96 = -14.28 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:30 2006