| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,271,022 – 9,271,132 |
| Length | 110 |
| Max. P | 0.543242 |
| Location | 9,271,022 – 9,271,132 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.16 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -14.86 |
| Energy contribution | -15.30 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9271022 110 - 27905053 AAAAUCAGUGCCUCGCAUAGGUGAUGCAAGAAAUAGUCAAUGCAGAUGGAAAGGAAUGUAAUGAA--------UUAUGGUACUAUAAGUACACUUAGAGAAAACGGUAGGUGUGCAGU ......((((((..((((.....)))).....(((((((.((((..(....)....)))).)).)--------))))))))))....(((((((((..(....)..)))))))))... ( -27.50) >DroSec_CAF1 42146 109 - 1 -AAAUCAGUGCCUCGCACAGGUGAUGCAAGAAAUAAUCAAUGCAGCUGGAAAGGAAUGUAAUACA--------UUAAGGUACUAUUAGUACACUUAGAGAAAACGGUAGGUGUGUGUU -.....(((((((.(((....((((..........)))).)))..((....)).((((.....))--------)).))))))).....((((((((..(....)..)))))))).... ( -21.90) >DroSim_CAF1 43314 110 - 1 GAAAUCAGUGCCUCGCACAGGUGAUGCAAGAAAUAAUCAAUGCAGCUGGAAAGGAAUGUAAUACA--------UUAAGGUACUAUUAGUACACUUAGAGAAUACUCUAGGUGCGUGUU ......(((((((.(((....((((..........)))).)))..((....)).((((.....))--------)).)))))))....(..(((((((((....)))))))))..)... ( -26.30) >DroYak_CAF1 42694 117 - 1 AAAAUAACUGCCUCGCACAGAUGAUGCAAGAAUUAAUCAAUGUCCCUCAAAAGGAACGUAAUGCAUCUCAUUAUUAAGGUACUAUGAGUACACUUUGAGAAAACAAUAUGUGUACAU- ........(((((.........((((((.((.....)).((((.(((....))).))))..)))))).........)))))......((((((.(((......)))...))))))..- ( -24.97) >consensus AAAAUCAGUGCCUCGCACAGGUGAUGCAAGAAAUAAUCAAUGCAGCUGGAAAGGAAUGUAAUACA________UUAAGGUACUAUUAGUACACUUAGAGAAAACGGUAGGUGUGCAUU ......((((((..(((....((((..........)))).)))..((....))........................))))))....(((((((((..(....)..)))))))))... (-14.86 = -15.30 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:26 2006