Locus 3411

Sequence ID 3R_DroMel_CAF1
Location 9,242,166 – 9,242,266
Length 100
Max. P 0.899897
window5474

overview

Window 4

Location 9,242,166 – 9,242,266
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 95.20
Mean single sequence MFE -30.34
Consensus MFE -27.88
Energy contribution -27.56
Covariance contribution -0.32
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.92
SVM decision value 1.01
SVM RNA-class probability 0.899897
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9242166 100 - 27905053
GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGAUUUUCAAUUUGGGGCACACGGGCCCCGAAAAUUCAAAUCGUUCGGCAUACU
.......((...((((((((...))))))))...((((.......(((((((((.....(((((......))))))))))))))....)))).))..... ( -32.00)
>DroSec_CAF1 13097 100 - 1
GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGAUUUUCAAUUUGGGGCACCCGGGCCCCGAAAAUUCAAAUCGUUCGGCAUACU
.......((...((((((((...))))))))...((((.......(((((((((.....(((((......))))))))))))))....)))).))..... ( -32.00)
>DroSim_CAF1 13144 100 - 1
GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGAUAUUCAAUUUGGGCCACCCGGGCCCCAAAAAUUCAAAUCGUUCGGCAUACU
.......((...((((((((...))))))))...((((..((((((((....)))....(((((.....))))).......)))))..)))).))..... ( -27.80)
>DroEre_CAF1 13724 100 - 1
GAUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGGUUUUCAAUUUGGGGCACCCGGGCCCCGAAAAUUCAAAUCGUUUGGUAUACU
(((((((.(((.((((((((...))))))))......(.....)))).))).....((((((((......))))))))......))))............ ( -28.90)
>DroYak_CAF1 13096 100 - 1
GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGGUUUUCAAUUUGGGGCACCCGUGCCCCAAAAAUUCAAAUCGGUUGGUAUACU
..(((((.....((((((((...)))))))).((((((..........))))))..(((((((((....)))))))))...........)))))...... ( -31.00)
>consensus
GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGAUUUUCAAUUUGGGGCACCCGGGCCCCGAAAAUUCAAAUCGUUCGGCAUACU
.......((...((((((((...))))))))...((((..((((((((....))).((((((((......))))))))...)))))..)))).))..... (-27.88 = -27.56 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:19 2006