Locus 3408

Sequence ID 3R_DroMel_CAF1
Location 9,237,224 – 9,237,323
Length 99
Max. P 0.628591
window5470

overview

Window 0

Location 9,237,224 – 9,237,323
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.51
Mean single sequence MFE -37.32
Consensus MFE -27.02
Energy contribution -27.42
Covariance contribution 0.39
Combinations/Pair 1.38
Mean z-score -1.44
Structure conservation index 0.72
SVM decision value 0.20
SVM RNA-class probability 0.628591
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9237224 99 - 27905053
UGAUUCGCAUCCUAGUUGGAGUGAUUUGUGCGGUCCUUUGGUCGCCGGUUAGCCAGGCUCUAACCCCUGGCUUGCAGGUGGCCAAGCAGUGGAAACUCC
.((.((((.(((.....))))))).))((....(((((((((((((.((.(((((((........))))))).)).))))))))))....))).))... ( -39.60)
>DroPse_CAF1 7936 96 - 1
UGAUCAGGAUCCUUGCCGCAGUACUUUGUGCGCUCCUCUGG---CCGGCCAGUCGGGCCCUUACUCCUGGCCUGCAGGUGGCCAAGCAGUGGAAGCUCC
......(((..(((.((((.((((...))))(((....(((---(((.((.(.((((((.........))))))).))))))))))).))))))).))) ( -36.00)
>DroEre_CAF1 9009 99 - 1
UGAUUCGCAUCCUAGUUGGAGUGAUCUGUGUGGUCCUUUGGUCGCCGGUUAGCCAGGCUCUAACCCCUGGCUUGCAGGUGGCCAAGCAGUGGAAACUCC
.(((.(((.(((.....)))))))))...((..(((((((((((((.((.(((((((........))))))).)).))))))))))....))).))... ( -40.60)
>DroYak_CAF1 8303 99 - 1
UGAUUCGCAUCCUAGUGGGAGUGAUUUGUGUGGUCCUUUGGUCGCCGGUUAGCCAGGCUCUAACCCCUGGCCUGCAGGUGGCCAAGCAGUGGAAGCUCC
.((.((((.(((.....))))))).))..((..(((((((((((((.((..((((((........))))))..)).))))))))))....))).))... ( -38.80)
>DroAna_CAF1 8621 99 - 1
UGCUUCGCAUCCUUGCCGGAGUUAUUUGCUUAAUCCUUUGGCCAUCUGUUAUCCAGGCUCUGGCUCCUGGCUUACAAGUGGCCAAGCAGUGGAAGCUCC
.(((((.(((...(((.(((.(((......)))))).(((((((..(((...(((((........)))))...)))..))))))))))))))))))... ( -36.50)
>DroPer_CAF1 10331 96 - 1
UGCUCAGGAUCCUUGCCGUAGUACUUUGUGCGCUCCUCUGG---CCGGCCAGUCGGGCCCUUACUCCUGGCCUGCAGGUGGCCAAGCAGUGGAAGCUCC
.(((.....(((((((....((((...)))).......(((---(((.((.(.((((((.........))))))).)))))))).)))).))))))... ( -32.40)
>consensus
UGAUUCGCAUCCUAGCCGGAGUGAUUUGUGCGGUCCUUUGGUCGCCGGUUAGCCAGGCUCUAACCCCUGGCCUGCAGGUGGCCAAGCAGUGGAAGCUCC
.................(((((...((((........(((((((((.((..((((((........))))))..)).))))))))))))).....))))) (-27.02 = -27.42 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:15 2006