Locus 3405

Sequence ID 3R_DroMel_CAF1
Location 9,230,429 – 9,230,528
Length 99
Max. P 0.531772
window5467

overview

Window 7

Location 9,230,429 – 9,230,528
Length 99
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 83.48
Mean single sequence MFE -33.93
Consensus MFE -23.83
Energy contribution -24.97
Covariance contribution 1.14
Combinations/Pair 1.15
Mean z-score -1.72
Structure conservation index 0.70
SVM decision value -0.00
SVM RNA-class probability 0.531772
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9230429 99 + 27905053
CAAACUGAGGUUCGUCCACUGAUGCAGGGUGUGCAGCUCCUUGAGGACCAAUGCCUGGCCCUGGACUGCACAAAAUAAUGCGAGCAGGACGACCAACAU--
........(((.(((((..((.((((...(((((((.(((...(((.(((.....))).)))))))))))))......))))..)))))))))).....-- ( -36.20)
>DroSec_CAF1 1263 99 + 1
CAAACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAAUGGCUGGCUCUGGACUGCACAAAAUAAUGCAAGCAGGAUGACCAACAU--
........(((.(((((.....((((...(((((((.(((..(((..(((.....)))))).))))))))))......))))....)))))))).....-- ( -35.40)
>DroSim_CAF1 1062 99 + 1
CAAACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAGUGGCUGGCUCUGGACUGCACAAAAUAAUGCAAGCAGGAUGACCAACAU--
........(((.(((((.....((((...(((((((.(((..(((..((((...))))))).))))))))))......))))....)))))))).....-- ( -36.90)
>DroEre_CAF1 1356 99 + 1
CAGACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAACCGCUGGCCCUGGACUGCACAGAAUAGCGCGAAGAGGACGACCAACAU--
........(((.(((((.((.((((....(((((((.(((...(((.(((.....))).))))))))))))).....))))..)).)))))))).....-- ( -39.80)
>DroYak_CAF1 1337 99 + 1
CAAACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAACUGCUGGCCCCGGACUGCACAGAAUAACGCGAGGAGGACGACCCACAU--
........((.((((((.((.(((.....(((((((.(((..(.((.(((.....)))))).))))))))))......))).))..)))))).))....-- ( -37.80)
>DroPer_CAF1 3600 98 + 1
CGAACUAAUAUUCGUCCACUGGUGUAGUGUAUGGAGCUCUUUCACAAACAAUUUCUGGGACUGCACCGCACAGAAAACUCCCAGCAGGAUCA---AAAUAC
((((......))))(((...((((((((...(((((................)))))..))))))))((...((....))...)).)))...---...... ( -17.49)
>consensus
CAAACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAAUGGCUGGCCCUGGACUGCACAAAAUAAUGCGAGCAGGACGACCAACAU__
........(((.(((((.(((...)))..(((((((.(((...(((.(((.....))).)))))))))))))..............))))))))....... (-23.83 = -24.97 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:12 2006