Locus 3404

Sequence ID 3R_DroMel_CAF1
Location 9,223,792 – 9,223,912
Length 120
Max. P 0.746554
window5466

overview

Window 6

Location 9,223,792 – 9,223,912
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.25
Mean single sequence MFE -45.06
Consensus MFE -37.54
Energy contribution -38.62
Covariance contribution 1.08
Combinations/Pair 1.10
Mean z-score -1.47
Structure conservation index 0.83
SVM decision value 0.46
SVM RNA-class probability 0.746554
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9223792 120 - 27905053
UCCUGUUUACUUCUUCUUCAAGAAAGAGCUGACGACAGCGGGAGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCAGCGGCAUAUGUGGUCACAGGAGCAGUGUAAGCAGGAGC
((((((((((..((.((((........((((....)))).(..((..((((.((.((....(((((.((....)).))))).)).)).))))..))..).)))).)).)))))))))).. ( -47.70)
>DroSec_CAF1 66153 120 - 1
UCCUUUUUACUUUUUCUUCAAGAAAGAGCUGACGACAGCCGGCGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCGGCGGCAUAUGUUGUCACAGGAGCAGUGUAAGCAGGAGC
((((.(((((((((((.....))))))((((.(..(.(((((.(((((.(((.((.(......).)).).)).))))).)))))((((.....))))...)..)))))))))).)))).. ( -43.30)
>DroSim_CAF1 58867 120 - 1
UCCUUUUUACUUCUUCUUCAAGAAAGAGCUGACGACAGCCGGCGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCGGCGGCAUAUGUGGUCACAGGAGCAGUGUAAGCAGGAGC
((((.(((((..((.((((.((......))(((.(((((((.(((..(....)..))....(((((.((....)).)))))).))))...))).)))...)))).)).))))).)))).. ( -40.40)
>DroEre_CAF1 69203 120 - 1
UCCAGAUCACUUCCUCUUCAGGAUGGAGCUGACGACAGCCGGAGCUGCGUAGGUGGUGAUAGGAGCAGCAAAGGCAGUUCCUGCGGCAUAUGUGCUCACAGGAGCGGCGUAAGCAGGAGC
(((..((((((.(((((((.....))))...(((.((((....)))))))))).)))))).)))...((....)).((((((((....(((((((((....)))).))))).)))))))) ( -45.10)
>DroYak_CAF1 59147 120 - 1
UCCUGAUCACUUCUUCUUCAGGAUGGAGCUGACGACAGCCGGAGCUGCGUAGGUGGUGAUGGGAGCACCAAAGGCAGCUCCCGCGGCAUAUGUGGUCACAGGAGCGGCGUAAGCAGGAGC
(((((....((((.((.....)).)))).((((.((((((((((((((.(...(((((.......))))).).))))))))...)))...))).)))))))))((.((....))....)) ( -48.80)
>consensus
UCCUGUUUACUUCUUCUUCAAGAAAGAGCUGACGACAGCCGGAGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCGGCGGCAUAUGUGGUCACAGGAGCAGUGUAAGCAGGAGC
((((((((((..((.((((........(((.(((.((((....))))))).))).(((((.(((((.((....)).))))).(((.....))).))))).)))).)).)))))))))).. (-37.54 = -38.62 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:11 2006