Locus 3402

Sequence ID 3R_DroMel_CAF1
Location 9,221,392 – 9,221,510
Length 118
Max. P 0.767882
window5463

overview

Window 3

Location 9,221,392 – 9,221,510
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 90.93
Mean single sequence MFE -39.50
Consensus MFE -32.74
Energy contribution -32.46
Covariance contribution -0.28
Combinations/Pair 1.24
Mean z-score -1.51
Structure conservation index 0.83
SVM decision value 0.52
SVM RNA-class probability 0.767882
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9221392 118 - 27905053
GACCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGACUUGGCCAAUUGCGUUUAGGCUUAAUUAAGUUCUGAGCGGCUUUUGGGCGACAAGGAGUGGUAGAUGGUGGUCAAAGU
(((((.(((..(((((.........)))))((((((....)(((.((((..((((((((((((....))).))))))).))..)))).)))....)))))...)).).)))))..... ( -39.80)
>DroSec_CAF1 63692 118 - 1
GACCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGACUUGGCCAAUUGAGUUUAGGCUUAAUUAAGUUCUGAGCGGCUUUCGCGCACCUAAGAGUGGUAGAUGGAGGUCAAAGU
.((((.(((..(((...((((..(((....((((((((.(((((....(((((((....)))))))))))))))))))))))..))))..)))..))))))).(((....)))..... ( -36.80)
>DroSim_CAF1 56168 118 - 1
GACCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGACUUGGCCAAUUGAGUUUAGGCUUAAUUAAGUUCUGAGCGGCUUUCGCGCACCUAAGAGUGGUAGAUGGAGGUCAAAGU
.((((.(((..(((...((((..(((....((((((((.(((((....(((((((....)))))))))))))))))))))))..))))..)))..))))))).(((....)))..... ( -36.80)
>DroEre_CAF1 66708 118 - 1
GACCAGCUCAAAGGGAAUGUGUUAGUCCUCCGCUCGGGGACUUGGCCAAUUGAGUUUAGGCCUAAUUGGGUUCUGAGCGGCUUUUGGGCAGCUGAGAGUGGUAGAUGGAGGUCAAAGG
((((.(((((((((...((.((((((((.((....)))))).)))))).....((((((((((....))).)))))))..))))))))).(((......))).......))))..... ( -41.20)
>DroYak_CAF1 56577 118 - 1
GGCCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGAUUUGGCCAAUUGAGUUUAGGCUUAAUUAAGUUCUAAGCGGCUUUUGGCCAGCCGAGAGUGGUAAGAGGAGGUCGGAGG
((((..(((..(((((.........)))))(((((..((...(((((((..(.((((((((((....))).)))))))..)..))))))).))..)))))....)))..))))..... ( -42.90)
>consensus
GACCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGACUUGGCCAAUUGAGUUUAGGCUUAAUUAAGUUCUGAGCGGCUUUUGGGCACCUAAGAGUGGUAGAUGGAGGUCAAAGU
((((.((((((..((........(((((((.....)))))))...))..))))))((((((((....))).)))))((.((((((((....)))))))).)).......))))..... (-32.74 = -32.46 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:08 2006