| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,308,814 – 1,308,918 |
| Length | 104 |
| Max. P | 0.794730 |
| Location | 1,308,814 – 1,308,918 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.04 |
| Mean single sequence MFE | -38.22 |
| Consensus MFE | -17.77 |
| Energy contribution | -17.42 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1308814 104 - 27905053 ----AGCCAGCGAGAGGAGGAGGAACUGCGACGCCUGACCAGGGCCAUGCAGAACUUAAGGAAGUGCAUGGAGUCGCUGGAGAGCGGUAC---UGCGGCUAGCAACAACGA ----..((((((.......(((...(((((..((((.....))))..)))))..))).......))).))).((.(((((...(((....---)))..))))).))..... ( -31.94) >DroVir_CAF1 8413 105 - 1 ---UACCCAGCUGGA---CGAGGAACUGCGGCGGCUGACCAAAGCGAUGCAUAAUCUCCGAAAAUGCAUGGAAACGCUGGACAGCAGCGGCGCAGUUGCGUCCAACGUCGA ---......(.((((---((...(((((((.((((((.(((..((.((((((...........))))))(....)))))).))))..)).))))))).)))))).)..... ( -41.20) >DroPse_CAF1 8651 98 - 1 ----AACCAGCGGGAGG---AGGAGCUGCGUCGCCUGACCAGGGCCAUGCAGAAUCUCCGCAAAUGCAUGGACACGCUGGAGGCCAA------UACGGCCAGCAAUAACGA ----..((((((...((---(((..((((((.((((.....)))).))))))..)))))((....)).......)))))).((((..------...))))........... ( -45.30) >DroYak_CAF1 8686 104 - 1 ----AGCCAGCGAGAGGAGGAGGAACUGCGACGUCUGACCAGGGCCAUGCAGAACUUAAGGAAGUGCAUGGAGUCGCUGGAGAGCGGUAC---UGCGGCCACCAACAACGA ----..(((((((..((.(((.(........).)))..))....((((((...((((....))))))))))..))))))).....(((..---....)))........... ( -30.10) >DroAna_CAF1 7103 108 - 1 ACAUGGUCAGCGGGAGGAAGAGGAGCUGCGGCGGCUUACGAGGGCCAUGCAGAACCUGCGGAAGUGCAUGGAGUCUCUGGAGAGCGGCAC---GGCAGGUAUCAACAAUGA .(((((((..((..........((((((...)))))).))..)))))))..((((((((....((((.....(.(((....)))).))))---.)))))).))........ ( -35.50) >DroPer_CAF1 8955 98 - 1 ----AACCAGCGGGAGG---AGGAGCUGCGUCGCCUGACCAGGGCCAUGCAGAAUCUCCGCAAAUGCAUGGACACGCUGGAGGCCAA------UACGGCCAGCAAUAACGA ----..((((((...((---(((..((((((.((((.....)))).))))))..)))))((....)).......)))))).((((..------...))))........... ( -45.30) >consensus ____AGCCAGCGGGAGG__GAGGAACUGCGACGCCUGACCAGGGCCAUGCAGAACCUCCGGAAAUGCAUGGAGACGCUGGAGAGCAG_AC___UGCGGCCAGCAACAACGA ......((((((........(((..(((((..((((.....))))..)))))..))).......))).)))....((((................))))............ (-17.77 = -17.42 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:46 2006