Locus 3398

Sequence ID 3R_DroMel_CAF1
Location 9,202,274 – 9,202,388
Length 114
Max. P 0.682212
window5452

overview

Window 2

Location 9,202,274 – 9,202,388
Length 114
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 89.62
Mean single sequence MFE -17.70
Consensus MFE -12.69
Energy contribution -13.00
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -1.95
Structure conservation index 0.72
SVM decision value 0.31
SVM RNA-class probability 0.682212
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9202274 114 + 27905053
ACUAAAUAUAACUCAGACUUAACGACGCUGUUCAUUUACGCCACAGCGGUGUAGUAUUUCAAAUACUAUUCCGGCUAAUCUUUAACGUAAACAAACAAAUGUUACACAAAAAUA
.......................((((.((((..((((((....(((((.(((((((.....))))))).)).))).........))))))..))))..))))........... ( -16.82)
>DroSec_CAF1 37897 114 + 1
ACUAAAUACAACUCAUUUAAAACGACGCUGUUCAUUUACGCCACAGCGUUGUAGUAUUUCAAAUACUAUUCCGGCUAAUCUUUAACGUAAACAAACAAAUGUUACACAAAAAUA
......(((............((((((((((...........))))))))))(((((.....)))))...................)))((((......))))........... ( -17.20)
>DroSim_CAF1 36717 114 + 1
ACUAAAUAUAACUCAUUUAUAACGACGCUGUUCAUUUACGCCACAGCGUUGUAGUAUUUCAAAUACUAUUCCGGCUAAUCUUUAACGUAAACAAACAAAUGUUACACAAAAAUA
.....................((((((((((...........))))))))))(((((.....)))))...................((((.((......))))))......... ( -16.90)
>DroYak_CAF1 36797 113 + 1
CCUAAUUAUAACUCAUUAAUAACAACGCUGUUUAUUUUCGCAACAGCGUUGUAGGAUUUCAAAUGAUAUUGAAGCUUAUCUUUAACGUUA-CAAACAAAUUUUACACAAAAAUA
(((.((((........)))).(((((((((((.........))))))))))))))........(((..((((((.....))))))..)))-....................... ( -19.90)
>consensus
ACUAAAUAUAACUCAUUUAUAACGACGCUGUUCAUUUACGCCACAGCGUUGUAGUAUUUCAAAUACUAUUCCGGCUAAUCUUUAACGUAAACAAACAAAUGUUACACAAAAAUA
.....................((((((((((...........))))))))))..............................((((((..........)))))).......... (-12.69 = -13.00 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:58 2006