| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,179,102 – 9,179,209 |
| Length | 107 |
| Max. P | 0.982594 |
| Location | 9,179,102 – 9,179,209 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 74.05 |
| Mean single sequence MFE | -16.13 |
| Consensus MFE | -9.68 |
| Energy contribution | -10.57 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9179102 107 - 27905053 UGUAUGUAAAUAUAUAUACAAUCUAAUGUAUAAACAUAACGAUUUAACAGAACAUAAUCAGAGUCAAUUCCCUAGAAACUCGUUUAUGUUAACAAUCAUAA-AACGUA ((((((((....)))))))).....((((....))))...((((......(((((((...((((...(((....)))))))..)))))))...))))....-...... ( -16.90) >DroSec_CAF1 16372 84 - 1 UGUAUAUAUAUA------GUGUAUA-AAUAUAAACAUAACGAUUUAACAGAACAUAAUCAGGGUCAACUCCCUAUACACUCGUUAAUGUUU----------------- (((((((.....------)))))))-.....(((((((((((.......((......))((((......))))......))))).))))))----------------- ( -15.10) >DroSim_CAF1 15364 101 - 1 UGUAUAUAUAUA------AUGUAUA-AAUAUAAACAUAACGAUUUAAAAGAACAUAAUCAGGGUCAACUCCCUAUACACUCGUUAAUGUUUGCGAGCAUAAAAACGUA (((((((.....------)))))))-....((((((((((((.......((......))((((......))))......))))).)))))))................ ( -16.40) >consensus UGUAUAUAUAUA______AUGUAUA_AAUAUAAACAUAACGAUUUAACAGAACAUAAUCAGGGUCAACUCCCUAUACACUCGUUAAUGUUU_C_A_CAUAA_AACGUA ..............................((((((((((((.......((......))((((......))))......))))).)))))))................ ( -9.68 = -10.57 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:52 2006