Locus 3392

Sequence ID 3R_DroMel_CAF1
Location 9,176,927 – 9,177,038
Length 111
Max. P 0.861171
window5445

overview

Window 5

Location 9,176,927 – 9,177,038
Length 111
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 76.63
Mean single sequence MFE -20.60
Consensus MFE -13.38
Energy contribution -13.52
Covariance contribution 0.14
Combinations/Pair 1.21
Mean z-score -1.60
Structure conservation index 0.65
SVM decision value 0.83
SVM RNA-class probability 0.861171
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9176927 111 + 27905053
UGCAUAAAUCAAUGCACAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUAACAAAGA----AUACAAUUUUUAAGAGACGGUGAAAGGUGGAAAAAAAUUAAG
(((((......)))))...((((((....(((((.((........)).)))))...)))))).......----...((.((((((........)))))).))............. ( -18.20)
>DroSec_CAF1 14140 111 + 1
UGCAUAAAUCAAUGCAGAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA----AUACAAUUUUUACGAGACGGCGAAAGCUGGAAAAAAAUGAAG
(((((......)))))..(((((......(((((.((........)).)))))..(((((((....)))----))))....)))))....((((....))))............. ( -27.00)
>DroSim_CAF1 13086 111 + 1
UGCAUAAAUCAAUGCAGAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA----AUACAAUUUUUACGAGACGGUGGAAGGUGGAAAAAAAUAAAG
(((((......)))))..(((((((....(((((.((........)).)))))...)).))))).....----...((.(((((((......))))))).))............. ( -21.60)
>DroEre_CAF1 19421 89 + 1
UGCAUAAAUCAAUGCAGAGUAAACAAAAGUACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA----AUAAAA---------------------UGUGAAAAAAU-AAG
(((((......))))).............(((..((((((.......))))))..)))(((((((....----......---------------------)))))))....-... ( -14.60)
>DroYak_CAF1 10943 110 + 1
UGCAUAAAUCAAUGCAGAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA----AUAAAAAUUGUACAAAAAGGAGAACGCUGAAAAAAAAU-UAG
(((((......)))))..........................((((((((.((.....((.(((((...----.......))))).))....)).))))))))........-... ( -19.20)
>DroAna_CAF1 10703 113 + 1
UGCAUAAAUCAAUGUUAAAUAAACAAGGAGGCGGAGCCAUUUUCAGUGCUGUCAGGUGUGCAGGAAACAAAAAAUGUUGUUUCUAG--GAAGGUGAGUCACUAAACGAAAUAAAG
.((.....((..((((.....))))..)).))(..(((((((((.(..(........)..).((((((((......))))))))..--))))))).))..).............. ( -23.00)
>consensus
UGCAUAAAUCAAUGCAGAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA____AUACAAUUUUUACGAGACGGUGAAAGCUGGAAAAAAAU_AAG
(((((......)))))..(((((((....(((((.((........)).)))))...))))).))................................................... (-13.38 = -13.52 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:51 2006