Locus 3391

Sequence ID 3R_DroMel_CAF1
Location 9,170,187 – 9,170,284
Length 97
Max. P 0.619714
window5444

overview

Window 4

Location 9,170,187 – 9,170,284
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 85.98
Mean single sequence MFE -41.70
Consensus MFE -32.92
Energy contribution -33.07
Covariance contribution 0.14
Combinations/Pair 1.26
Mean z-score -2.04
Structure conservation index 0.79
SVM decision value 0.18
SVM RNA-class probability 0.619714
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9170187 97 - 27905053
CGGGCUGACUGACUUCCGAUGGGUCACCACUUUGAGGUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAAGAGAGCUCUUUUGGCUCGCCCGGA
(((((................((((((((....(((((((((((........)))))))))))))))))))....(((((.....)))))))))).. ( -46.70)
>DroSec_CAF1 7486 97 - 1
CGGGCUGACUGACUUCUGAGGGGUCGCCACUUUGUGGUGGUGUCACCAGCAGGGCUCCACUUUUGGUGGCCAGGAGAGCUCUUUUGGCUCGCCCGGA
(((((((((.(((((.....)))))((((((....))))))))))((((.(((((((...((((((...))))))))))))).))))...))))).. ( -44.10)
>DroSim_CAF1 6398 97 - 1
CGGGCUGACUGACUUCCGAGGGGUCGCCACUUUGCGGUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAGGAGAGCUCUUUUGGCUCGCCCGGA
(((((.........(((....((((((((......(((((((((........)))))))))..)))))))).)))(((((.....)))))))))).. ( -46.70)
>DroEre_CAF1 7608 97 - 1
CGGGCUGACUGACUUCCGAUGGGUCACUACUUUGUGGUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAAGAGAGCUCUUUUUGCUCGUCCGGA
(((((................((((((((......(((((((((........)))))))))..))))))))....((((.......))))))))).. ( -39.00)
>DroYak_CAF1 4187 97 - 1
CGGGCUGACUGACUUCCGCUGGGUCACUACUUUGUGUUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAAGAGAGCCCUUUUGGCUCGUCCAGA
.((((.......(((..((((((.((((((.....).))))).).))))).((.(((((....))))).))))).(((((.....)))))))))... ( -41.30)
>DroAna_CAF1 4174 97 - 1
CCGGUUGACUGAGUUCCGGCGAUUCCACGUUUGGAGGGGGAGUGACCAAUAGAGCCCCACUCUUGGUGGCCAACAGAGCUCUCUUGGCCCGUCCAGC
..(((..(..((((((.(......((((....((((((((..(........)..)))).))))..))))....).))))))..)..)))........ ( -32.40)
>consensus
CGGGCUGACUGACUUCCGAUGGGUCACCACUUUGUGGUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAAGAGAGCUCUUUUGGCUCGCCCGGA
(((((.....(((((.....)))))..((((....(((((((((........)))))))))...))))((((((((....))))))))..))))).. (-32.92 = -33.07 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:50 2006