Locus 339

Sequence ID 3R_DroMel_CAF1
Location 1,297,240 – 1,297,342
Length 102
Max. P 0.862709
window564

overview

Window 4

Location 1,297,240 – 1,297,342
Length 102
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 87.58
Mean single sequence MFE -20.57
Consensus MFE -16.79
Energy contribution -17.57
Covariance contribution 0.78
Combinations/Pair 1.07
Mean z-score -2.47
Structure conservation index 0.82
SVM decision value 0.84
SVM RNA-class probability 0.862709
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1297240 102 + 27905053
GAAGAUUCUUCAUUUUAGUAACAUUGUUAAUGACCACUUAGUUAAAAACCACUUAUCAUUCUGAAGUGAAGACGUAUACAAACACACAU--------AGCCACACACUGC
......((((((((((((((((...)))).((((......))))................)))))))))))).................--------............. ( -13.40)
>DroSec_CAF1 3275 102 + 1
GAAUAUUCUUCAUUUUAGUAACAUUGUUAAUGCCUACUUAGAUAUAAACCACAUAUCAUACUGAAGUGAAGACGUAUACAAACAUACAU--------AGGUUCACAUUGC
((((..((((((((((((((.(((.....)))........(((((.......))))).)))))))))))))).((((......))))..--------..))))....... ( -21.80)
>DroSim_CAF1 3286 110 + 1
GAAUAUUCUUCAUUUUAGUAACAUUGUUAAUGCCUACUUAGAUAUAAACCACAUAUCAUACUGAAGUGAAGACGUAUACAAACAUACAUAUGUAUGUAGGUUCACAUUGC
......((((((((((((((.(((.....)))........(((((.......))))).)))))))))))))).((..((..((((((....))))))..))..))..... ( -26.50)
>consensus
GAAUAUUCUUCAUUUUAGUAACAUUGUUAAUGCCUACUUAGAUAUAAACCACAUAUCAUACUGAAGUGAAGACGUAUACAAACAUACAU________AGGUUCACAUUGC
((((..((((((((((((((.(((.....)))........(((((.......))))).)))))))))))))).((((......))))............))))....... (-16.79 = -17.57 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:45 2006