| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,164,078 – 9,164,197 |
| Length | 119 |
| Max. P | 0.697192 |
| Location | 9,164,078 – 9,164,197 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 62.67 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -10.72 |
| Energy contribution | -9.95 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9164078 119 + 27905053 CGGUGAAUUCGUUUUAUUGAAAGCACAAGGGUUAACAAAUCCCCAGGCGGAAGUUCUUAA-ACGUUUCACAACAAUACAAAAAAAAAGAAAAGGGGUAAAGAAACACACACCUUGUGCGA (((((((.....)))))))...((((((((((........((((.(((....))).....-..(((....)))...................))))...........)).)))))))).. ( -27.41) >DroYak_CAF1 57353 119 + 1 CGGUGAGUCCGUUUUAUUGAGUGCAAAAGGGUUAAAAAACCCACAAACGGAACUUCUAAA-ACGUUUCACGACAGCAAAAAAAAAAACAAAAAAGGAAAGGAAACACACACCUAGUGUGA .((((.((..(((((.((...(((....(((((....)))))......(((((.......-..)))))......)))...)).)))))...........(....))).))))........ ( -25.00) >DroAna_CAF1 57712 97 + 1 GAGUGAUUCCGUUUUAACGAUAACAAAAGGGUUCCAGGA-CCCCAAGCUUAACUCCUCCCUGGGCUUCGUA----------------UAAAA--GG---UGACACACACACCUU-UCCGA ..(((..(((.(((((((((........(((((....))-)))..((((((.........)))))))))).----------------)))))--.)---.))..))).......-..... ( -20.80) >consensus CGGUGAAUCCGUUUUAUUGAAAGCAAAAGGGUUAAAAAA_CCCCAAGCGGAACUUCUAAA_ACGUUUCACAACA__A_AAAAAAAAACAAAA__GG_AAAGAAACACACACCUUGUGCGA .((((.......................(((((....)))))..(((((.............))))).........................................))))........ (-10.72 = -9.95 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:47 2006