Locus 3387

Sequence ID 3R_DroMel_CAF1
Location 9,158,028 – 9,158,118
Length 90
Max. P 0.902737
window5439

overview

Window 9

Location 9,158,028 – 9,158,118
Length 90
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 83.42
Mean single sequence MFE -24.93
Consensus MFE -20.22
Energy contribution -20.00
Covariance contribution -0.22
Combinations/Pair 1.23
Mean z-score -2.53
Structure conservation index 0.81
SVM decision value 1.03
SVM RNA-class probability 0.902737
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9158028 90 - 27905053
AAUUGAUGAGCCCCCGUAAGGGGCGUUAUGAAAACAUUAUUUGCAAGCGAAAGCUUCGAUUGAGAAUACAUACGCAGAA-----GUCUGAAA-----------------UUU
....(((.....(((....)))((((.(((......(((.(((.((((....))))))).))).....)))))))....-----))).....-----------------... ( -23.80)
>DroSec_CAF1 49181 90 - 1
AAUUGAUGAGCCCCCAUAAGGGGCGUUAUGAAAACAUUAUUUGCGAGCGAAAGCUUCGAUUGAGAAUACAUAAGCAGAA-----GUCUGAAA-----------------UUU
.........(((((.....))))).(((((......(((.(((.((((....))))))).))).....))))).(((..-----..)))...-----------------... ( -23.70)
>DroSim_CAF1 44128 90 - 1
AAUUGAUGAGCCCCCGUAAGGGGCGUUAUGAAAACAUUAUUUGCGAGCGAAAGCUUCGAUUGAGAAUACAUACGCAGAA-----GUCUGAAA-----------------UUU
....(((.(((((((....)))).)))............(((((((((....)))((......)).......)))))).-----))).....-----------------... ( -24.80)
>DroEre_CAF1 54619 90 - 1
AAUUGAUGAGCCCCCGUAAGGGGCGUGAGGAAAACAUUGUCUGCGAGCGAAAGCUUCGAUUAAGAAUACAUAAGCAGAA-----GUCUGAAA-----------------AAU
....((((...((((....))))(....).....)))).(((((.(((....)))((......))........))))).-----........-----------------... ( -24.80)
>DroYak_CAF1 51119 90 - 1
AAUUGAUGAGCCCCCGUAAGGGGCGUUAUGAAAACAUUGUCUGCGAGCGAAAGCUUCGAUUAAGAAUACAUGAGCAGAA-----GUCUGAAA-----------------UUU
....(((.(((((((....)))).)))............(((((.(((....)))((......))........))))).-----))).....-----------------... ( -25.20)
>DroPer_CAF1 58812 110 - 1
AUUUGAUGAGCCCCAGUUCGGGGCAUUAUGAAAACAUUGUUUGCGA--GAAACCUUCAAUCGAAAAGACAUAAGCAGAAAAACCGUCUGAAAAAAAGACAAAGCGCAAACUU
.(((.(((((((((.....))))).)))).))).....(((((((.--......(((....)))....................((((.......))))....))))))).. ( -27.30)
>consensus
AAUUGAUGAGCCCCCGUAAGGGGCGUUAUGAAAACAUUAUUUGCGAGCGAAAGCUUCGAUUGAGAAUACAUAAGCAGAA_____GUCUGAAA_________________UUU
.....(((.(((((.....)))))............(((.(((.((((....))))))).))).....)))...((((.......))))....................... (-20.22 = -20.00 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:44 2006