Locus 3383

Sequence ID 3R_DroMel_CAF1
Location 9,134,438 – 9,134,546
Length 108
Max. P 0.621720
window5434

overview

Window 4

Location 9,134,438 – 9,134,546
Length 108
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 75.51
Mean single sequence MFE -45.58
Consensus MFE -20.18
Energy contribution -20.68
Covariance contribution 0.50
Combinations/Pair 1.31
Mean z-score -1.96
Structure conservation index 0.44
SVM decision value 0.18
SVM RNA-class probability 0.621720
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9134438 108 + 27905053
CUUUCUGCUAGUCCUCUGCGGCUUCCUGCUGGGCGCCCUCGUCUACGUCGGCAAGAAUAUAGCCGAGGAGCACCAGAGGC------AGCAGCACGCGAAUG---CUUCCCAGUGGGC
((..(((..(((..((.((((((..(((((.((.(((((((.(((..((.....))...))).))))).)).))...)))------)).))).)))))..)---))...)))..)). ( -40.40)
>DroVir_CAF1 50481 108 + 1
GUUUCUUUUGGUGCUCUGCAGUUUUCUGCUCGGCGCUUUGGUUUAUGUUGGCAAAAAUAUAGCCGACGAGCAUCAGAAGC------AGCAG---GCGAGCGGUAGUACGCUGAGCGU
(((.((((((((((((.((((....))))(((((((....)).((((((......))))))))))).)))))))))))).------)))..---((.((((......))))..)).. ( -43.30)
>DroPse_CAF1 26499 108 + 1
GUUCCUCCUGGUGCUGUGCGGCUUCCUGCUGGGGGCACUCGUCUAUGUGGGCAAGAACAUAGCCGACGAGCACCAGAGGC------AGCAGGCGGCGAACA---GCACGCAGGCGGC
...((.(((((((((((((.((((.(((((...((..((((((..((((........))))...))))))..))...)))------)).)))).))..)))---)))).)))).)). ( -53.80)
>DroGri_CAF1 54194 105 + 1
AUUUCUGCUGGUGCUGUGCAGUUUUCUGUUGGGCGCCUUGGUUUAUGUGGGCAAGAAUAUUGCCGAGGAGCAUCAGAGGC------AGCAG---GCGGGCG---GCACUCUGGCCGU
....(((((..((((((((((....))))(((((.(((((((..((((........)))).))))))).)).)))...))------)))))---))))(((---((......))))) ( -41.10)
>DroAna_CAF1 26953 114 + 1
CUUCCUGCUUGUGCUGUGCGGCUUCCUGCUGGGCGCCCUUGUCUAUGUGGGCAAGAAUAUAGCCGAUGACCAAAAGAGACAGCAACAGCAGCAAGCCAACA---GCUCCCAGUUGGG
...((.(((.(.(((((..(((((.(((((((((...(((((((....)))))))......)))(.....)..............)))))).))))).)))---)).)..))).)). ( -41.10)
>DroPer_CAF1 36234 108 + 1
GUUCCUCCUGGUGCUGUGCGGCUUCCUGCUGGGGGCACUCGUCUAUGUGGGCAAGAACAUAGCCGACGAGCACCAGAGGC------AGCAGGCGGCGAACA---GCACGCAGGCGGC
...((.(((((((((((((.((((.(((((...((..((((((..((((........))))...))))))..))...)))------)).)))).))..)))---)))).)))).)). ( -53.80)
>consensus
GUUCCUGCUGGUGCUGUGCGGCUUCCUGCUGGGCGCCCUCGUCUAUGUGGGCAAGAAUAUAGCCGACGAGCACCAGAGGC______AGCAG___GCGAACA___GCACGCAGGCGGC
...(((.((((((((...(((((.((..((((((......))))).)..)).........)))))...)))))))))))........((.....))..................... (-20.18 = -20.68 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:40 2006