Locus 3381

Sequence ID 3R_DroMel_CAF1
Location 9,128,509 – 9,128,607
Length 98
Max. P 0.659488
window5432

overview

Window 2

Location 9,128,509 – 9,128,607
Length 98
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 78.03
Mean single sequence MFE -34.03
Consensus MFE -20.86
Energy contribution -21.97
Covariance contribution 1.11
Combinations/Pair 1.14
Mean z-score -1.52
Structure conservation index 0.61
SVM decision value 0.26
SVM RNA-class probability 0.659488
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9128509 98 + 27905053
CUCA-------UUUUAGGGCUGACGGUUAAGUCAGUGGCCAUCUUUUUGGGCCUGGCCUCUACUGCUUUUUGUGUGGCCACGAUUGUGCUGGCCGUUCAGAAUGC
....-------...((((((((((......))))))((((((((....)))..)))))))))..((.(((((..((((((((....)).))))))..))))).)) ( -32.60)
>DroVir_CAF1 43308 104 + 1
AUCC-AUUUUCGAUCAGGGCUAACGGUCAAGGUGGUGGCCAUCUGCUUGGGCCUGACCACAACAGCCUUUUGUGUGGCCACAAUUGUGUUGGCCGUGGAGAAUGC
...(-((((((...((.((((((((..(((....((((((((..((..((((.((.......))))))...))))))))))..))))))))))).))))))))). ( -40.80)
>DroPse_CAF1 21155 96 + 1
CCC---------UUUAGGGCUGACUGUCAAAUUUGUGGCCAUCUUCCUGGGCCUUGCCACAACGGCCUUCUGUAUUUCCACCAUUGUGCUGGCCGUACAGAAAUC
(((---------....)))....((((......((((((..(((....)))....))))))((((((....((((..........)))).))))))))))..... ( -27.40)
>DroSec_CAF1 25655 98 + 1
CUCG-------UUUUAGGGCUGACGGUUAAGUCAGUGGCCAUCUUUUUGGGCCUGGCCUCCACUGCUUUUUGUGUGGCCACGAUUGUGCUGGCCGUUCAGAAUGC
....-------.....((((((((......))))))((((((((....)))..))))).))...((.(((((..((((((((....)).))))))..))))).)) ( -33.70)
>DroEre_CAF1 27075 98 + 1
UUUA-------CCAUAGGGCUGACGGUAAAGUCACUGGCCAUCUUUUUCGGCCUGGCCGCCACUGCUUUUUGUGUGGCCACGAUUGUGCUGGCCGUUCAGAACGC
....-------.....(..((((((((..((.(((.((((.........))))(((((((.((........))))))))).....))))).)))).))))..).. ( -35.70)
>DroAna_CAF1 21022 104 + 1
UUCGAUUUAA-UCGCAGGGCUGACGGUCAAGGCAGUGGCCAUCUUUUUGGGCCUGGCCACAACGGCCUUUUGUGUGUCAACCAUUGUGCUGGCGGUUCAGAAUGC
..........-..(((...(((((.((((..((((((((((......)))...(((((((((.......))))).)))).)))))))..)))).).))))..))) ( -34.00)
>consensus
CUCA_______UUUUAGGGCUGACGGUCAAGUCAGUGGCCAUCUUUUUGGGCCUGGCCACAACUGCCUUUUGUGUGGCCACGAUUGUGCUGGCCGUUCAGAAUGC
...................((((((((((.....((((((((......((((............)))).....))))))))........))))))).)))..... (-20.86 = -21.97 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:37 2006