| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,287,768 – 1,287,883 |
| Length | 115 |
| Max. P | 0.760843 |
| Location | 1,287,768 – 1,287,883 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.32 |
| Mean single sequence MFE | -30.82 |
| Consensus MFE | -17.72 |
| Energy contribution | -17.33 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1287768 115 - 27905053 GGAUGUGGAUAUAAAGGUGGUAGUGCCCGAGGGAAUUAUCUGCGCCUUCAGCAAAAGUGAGCCACAGACUAUGCUGUGGAAGUACAAGGUAAGUGGUGAUGGCUUUAAUAUUAAA .......(((((.(((((((((((.((....)).))))))..((((....((....(((..((((((......))))))...)))...))....))))...))))).)))))... ( -29.90) >DroVir_CAF1 29352 111 - 1 GGAUGUGGAUAUUAGAGUUGUAGUGCCAGAGGGCAUUAUAUGUGCAUUCAGCAAGAGUGAUCCGGAGCUGAUGCUCUGGAAGCAUCAGGUGAGUAAAAAAAA----AACAUUAUU .(((((............(((((((((....)))))))))....(((((.....))))).((((((((....)))))))).)))))................----......... ( -33.70) >DroSec_CAF1 58211 115 - 1 GGAUGUGGAUAUAAAGGUGGUAGUGCCCGAGGGAAUUAUCUGCGCCUUCAGCAAAAGUGAGCCACAGACGAUGCUGUGGAAGUACAAGGUAAGUGGUGAAGACUUUAACAUUAUA .(((((.....(((((((((((((.((....)).)))))).))..(((((.((...(((..((((((......))))))...)))........)).))))).))))))))))... ( -29.60) >DroSim_CAF1 55735 115 - 1 GGAUGUGGAUAUAAAGGUGGUAGUGCCCGAGGGAAUUAUCUGCGCCUUCAGCAAAAGUGAGCCACAGACGAUGCUGUGGAAGUACAAGGUAAGUGGUGAAGACUUUAACAUUAUA .(((((.....(((((((((((((.((....)).)))))).))..(((((.((...(((..((((((......))))))...)))........)).))))).))))))))))... ( -29.60) >DroWil_CAF1 41343 111 - 1 AGAUGUGGAUAUACGAGUGGUGGUGCCAGAGGGUAUAAUAUGUGCCUUCAGUAAAAGCGAUCCACAGAACAUUCUGUGGAAGUAUCAGGUAGGCUAUAAU---UCCAAAAUUC-A .((..((((.......(((((..((((.((((((((.....)))))))).......((..((((((((....)))))))).))....)))).)))))...---))))....))-. ( -34.30) >DroAna_CAF1 55302 110 - 1 GGAUGUGGAUAUUAAAGUGGUGGUCCCAGAGGGAGUCAUUUGUGCUUUCAGCAAGAGUGAUCCGAAGUCCAUGCUCUGGAAGUACAAGGUAAGU--UGGAGGCAUUAAU---CGA .(((((((((.......(((.....)))...(((.((((((.(((.....))).)))))))))...))))...(((..(...(((...)))..)--..))))))))...---... ( -27.80) >consensus GGAUGUGGAUAUAAAAGUGGUAGUGCCAGAGGGAAUUAUCUGCGCCUUCAGCAAAAGUGAGCCACAGACGAUGCUGUGGAAGUACAAGGUAAGUGGUGAAGACUUUAACAUUAUA .......................((((.(((((...........))))).......(((..((((((......))))))...)))..))))........................ (-17.72 = -17.33 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:44 2006