| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,122,594 – 9,122,700 |
| Length | 106 |
| Max. P | 0.532467 |
| Location | 9,122,594 – 9,122,700 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.19 |
| Mean single sequence MFE | -30.28 |
| Consensus MFE | -19.92 |
| Energy contribution | -20.40 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9122594 106 + 27905053 UUCGCACAUACAUUA--------------UAUAGCUACCGUUGGUCGAUCCCCAUCACAUAUUUCACCAGCUCGGAUUCGGUGGUGCAGCGUCUGUGGUUUUAUCAUGACCAGAGCGAAA (((((.(...(((.(--------------((.(((((((((((((.(((....)))))......(((((.(........).))))))))))...)))))).))).)))....).))))). ( -25.60) >DroVir_CAF1 36534 120 + 1 UUCACACAUAUAUUAUGUAUUAUUAUUGUUGCAGCUACCGCUGGUCCAUACCCAUCACAUAUACCACAAGCGCAGAUGCCACGGUGCAGCGUGCCUGGUUUUAUCACGAUCAGAGCGAAA ((((((((((...))))).........((((((.(....((((((.................)))...)))((....))...).))))))))((((((((.......)))))).))))). ( -22.53) >DroPse_CAF1 15094 109 + 1 UUCGCACAUACAUUACC-----------UUGCAGCUACCGCUGGUCAAUACCCAUCACAUACACCACCAGCGGCGAGUCGACUGUGCAGCGGGUCUGGUUUUACCAUGACCAGAGCGAAA (((((..........((-----------((((((((.((((((((....................))))))))..)))......))))).)).(((((((.......)))))))))))). ( -35.55) >DroWil_CAF1 13981 109 + 1 UUCGCACAUUUUUUAUA-----------CUGUAGCUACCGUUGGUCGAUUCCCAUCACAUAUGCGACCAGCGCAAGUGCGACGGUCCAGCGCGUUUGGUUUUAUCACGAUCAGAGCGAAA (((((...........(-----------((((.(((..(((((((((................)))))))))..)))...)))))........(((((((.......)))))))))))). ( -29.69) >DroAna_CAF1 14929 104 + 1 UUCGCACAUACAUUA----------------CAGCUACCGGUGGUCGAUCCCCAUCACCUACACCACCAGUGGCGAUCCGACGGUGCAGCGUGUCUGGUUUUACCACGACCAGAGCGAAA ...((((........----------------..(((((.((((((.................)))))).))))).........))))..(((.(((((((.......))))))))))... ( -33.24) >DroPer_CAF1 24564 109 + 1 UUCGCACAUACAUUACC-----------UUGCAGCUACCGCUGGUCAAUACCCAUCACAUACACCACCAGCGGCGAGUCGACUGUGCAGCGAGUCUGGUUUUACCAUGACCAGAGCGAAA (((((...........(-----------((((.((..((((((((....................))))))))..((....))..)).)))))(((((((.......)))))))))))). ( -35.05) >consensus UUCGCACAUACAUUA_____________UUGCAGCUACCGCUGGUCGAUACCCAUCACAUACACCACCAGCGCCGAUUCGACGGUGCAGCGUGUCUGGUUUUACCACGACCAGAGCGAAA (((((............................((((((((((((....................))))))((....))...)))..)))...(((((((.......)))))))))))). (-19.92 = -20.40 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:35 2006