| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,108,124 – 9,108,223 |
| Length | 99 |
| Max. P | 0.974072 |
| Location | 9,108,124 – 9,108,223 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 76.37 |
| Mean single sequence MFE | -37.18 |
| Consensus MFE | -26.18 |
| Energy contribution | -25.68 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.974072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9108124 99 - 27905053 C------GGCGGAAGCAGCUGGUGUGGCAGCCAUUUUGUUGUUGUUGCCAUCGGCAAUGGCCGUCUCGGCCAAUAUAAAGGUACUGCCUAUUAUGUUGGGCGACA .------(((((.....((((..((((((((.((......)).)))))))))))).....)))))(((.((((((((((((.....))).))))))))).))).. ( -42.60) >DroPse_CAF1 222 99 - 1 U------GGCUGAGGAAGCGGGAGCGGCGGCCAUCUUGUUGUUGUUGCCGUCAGCAAUGGCCGUCUCGGCCAGUAUGAAGGUGCUGCCUAUUAUGUUGGGCGUCA .------(((((((...((....)).((((((((..(((((.((....)).))))))))))))))))))))(((((....)))))(((((......))))).... ( -43.30) >DroGri_CAF1 12664 86 - 1 -------------------GCCAGUUGCUGACAUCUUGUUGUUGUUGGCAUCGGCGAUGGCUGUCUCGGCCAAUAUAAAGGUGCUGCCUAUUAUAUUCGGUGCCA -------------------(((...(((..(((.(.....).)))..)))..)))..((((((...)))))).......((..(((...........)))..)). ( -29.50) >DroWil_CAF1 6 99 - 1 C------UCCAGAAGCGGAAGCGGGAGCGGCCAUCUUAUUGUUGUUACCAUCGGCAAUUGCCGUUUCGGCCAAUAUAAAGGUGCUGCCUAUUAAAUUGGGUGUCA (------(((....((....)).)))).(((((((((..(((((...((..((((....))))....)).)))))..))))))..(((((......)))))))). ( -32.30) >DroAna_CAF1 2 105 - 1 CAGCAGUGGCGGUAGCGGAAGGUUUGGCGGCCAUCUUGUUGUUGUUGCCAUCGGCAAUGGUCGUCUCGGCUAAUAUGAAAGUGCUUCCUAUUAUGUUGGGUGUCA .((((.(..((.((((.((......(((((((((..(((((.((....)).)))))))))))))))).))))...))..).)))).((((......))))..... ( -32.30) >DroPer_CAF1 9774 99 - 1 U------GGCUGAGGAAGCGGGAGCGGCGGCCACCUUGUUGUUGUUGCCGUCAGCAAUGGCCGUCUCGGCCAGUAUGAAGGUGCUGCCUAUUAUGUUGGGCGUCA .------(((((((...((....)).(((((((..((((((.((....)).))))))))))))))))))))(((((....)))))(((((......))))).... ( -43.10) >consensus C______GGCGGAAGCAGCGGGAGUGGCGGCCAUCUUGUUGUUGUUGCCAUCGGCAAUGGCCGUCUCGGCCAAUAUAAAGGUGCUGCCUAUUAUGUUGGGCGUCA .........................((((((((..((((((.((....)).)))))))))))))).((.((((((((((((.....))).))))))))).))... (-26.18 = -25.68 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:30 2006