| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,106,150 – 9,106,269 |
| Length | 119 |
| Max. P | 0.973485 |
| Location | 9,106,150 – 9,106,269 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.08 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -13.56 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.973485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9106150 119 - 27905053 UUUCUUCUAUAUUACUCUGACGCAUUCGCAAUUAGCGUUUGCGGCUAGGAAAAAAGAGAUUCGAUUCGAAUCGAAGCGAUUUGAUUCGUGAAACUAAACUCCA-AAAGUCAACUAUAUAG ......((((((.....(((((((..(((.....)))..))).....(((......((.((((...(((((((((....))))))))))))).))....))).-...))))...)))))) ( -30.30) >DroSim_CAF1 16973 114 - 1 UUUCUUAUAUAUUACUCUGACGCAUUCGCAAUUAGCGCUUGCGACUAGGAAAAAAGAGAUUCGAUUCGAAUCGAA-----UUGAUUCGUGAAACUAAACUCCA-AAAGUCAACUAUAUAG .....((((((..........(((..(((.....)))..)))((((.(((.......((.((((((((...))))-----)))).))((........))))).-..))))...)))))). ( -26.20) >DroAna_CAF1 19101 106 - 1 UCGCUUACUUU----UCU--AGCAUUCGCAAUUAGCAAUUGCCGACAAGACCAAAGAGAUCCUACUCAGUUCGGUUCUAUUCAAUUCAUGGAAUCAAACUUCUCGAAUUCAA-------- ..(((......----...--)))(((((((((.....))))).............((((........((((.((((((((.......)))))))).))))))))))))....-------- ( -18.70) >consensus UUUCUUAUAUAUUACUCUGACGCAUUCGCAAUUAGCGAUUGCGGCUAGGAAAAAAGAGAUUCGAUUCGAAUCGAA_C_AUUUGAUUCGUGAAACUAAACUCCA_AAAGUCAACUAUAUAG ...............(((..((((..(((.....)))..))))....))).........(((....((((((((......)))))))).)))............................ (-13.56 = -14.23 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:29 2006