| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,103,819 – 9,103,911 |
| Length | 92 |
| Max. P | 0.959783 |
| Location | 9,103,819 – 9,103,911 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 92.88 |
| Mean single sequence MFE | -18.85 |
| Consensus MFE | -17.11 |
| Energy contribution | -17.00 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.959783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9103819 92 - 27905053 GACAACAAAU--AUUUAUGUCUUCACACG-GACAAGUAAUUAAAGAUAAUAAUUACUUGAGGAGAGACACAUUUCCAGUUAAAGUCAUAAAAUUU ..........--.((((((.(((...((.-..((((((((((.......)))))))))).(((((......))))).))..))).)))))).... ( -20.40) >DroSim_CAF1 14652 91 - 1 GACAAGAAAU--AUUUAUGUCUUCACACG-GACAAGUAAUUAAAGAUAAUAAUUACUUGAGGGGA-ACACAUUUCCAGUUAAAGUCAUAAAAUUU ..........--.((((((.(((...((.-..((((((((((.......)))))))))).((..(-.....)..)).))..))).)))))).... ( -18.60) >DroYak_CAF1 13896 93 - 1 GACAACAAAUAUAUUUAUGUCUUCACCCGAGACAAGUAAUUAAAGAUAAUAAUUACUU-AGGGGA-ACACAUUUCCAGCUAAGGUCAUAAAAUUU (((.............((((.(((.(((.....(((((((((.......)))))))))-.)))))-).))))...........)))......... ( -17.55) >consensus GACAACAAAU__AUUUAUGUCUUCACACG_GACAAGUAAUUAAAGAUAAUAAUUACUUGAGGGGA_ACACAUUUCCAGUUAAAGUCAUAAAAUUU .............((((((.(((.........((((((((((.......)))))))))).(((((......))))).....))).)))))).... (-17.11 = -17.00 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:27 2006