Locus 3369

Sequence ID 3R_DroMel_CAF1
Location 9,100,904 – 9,101,000
Length 96
Max. P 0.872950
window5419

overview

Window 9

Location 9,100,904 – 9,101,000
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.68
Mean single sequence MFE -24.26
Consensus MFE -18.54
Energy contribution -18.58
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -2.11
Structure conservation index 0.76
SVM decision value 0.88
SVM RNA-class probability 0.872950
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9100904 96 + 27905053
GAGCAAAUUAAAUAAGGGCCAAUUUGUGACUUUGAUUGGGUCGCGAAUAUAAGUUG--GUAACCAGUGCUCUCUGGAAACACAUGCAUAUUUAUGCAA
(((((..........(((((((((((((((((.....)))))))))......))))--))..))..)))))..((....))..(((((....))))). ( -25.90)
>DroSec_CAF1 10641 98 + 1
GAUGAAAUUAAAUAAGGGCCAAUUUGUGACUUCGAUUAGGUCGCGAAUAUAUGUUGGGGUAACCAGUGCUCAAUGGAAUCACAUGCAUAUUUAUGCAA
...............(((((.(((((((((((.....)))))))))))......(((.....)))).))))............(((((....))))). ( -23.40)
>DroSim_CAF1 11797 98 + 1
GAUGAAAUGAAAUAAGGGCCAAUUUGUGACUUUGAUUAGGUCGCGAAUAUAUGUUGGGGUAACCAGUGCUCACUGGAAACACAUGCAUAUUUAUGCAA
...............(((((.(((((((((((.....)))))))))))......(((.....)))).))))..((....))..(((((....))))). ( -26.20)
>DroEre_CAF1 11530 96 + 1
GAUGAAAUAAAAUAAGGGCCAAUUGGUGACUUCUAAUAGGUCGCGAAUAUAAGUUG--GUAACCAGUGCUCACUGGAAACACAUGCAUAUUUAUGCAA
.................(((((((.(((((((.....))))))).......)))))--))..(((((....))))).......(((((....))))). ( -23.20)
>DroYak_CAF1 10888 96 + 1
GAUGAAAUUAAAUAAGGGCCAAUUUGUGACUUCUAUUAGGUCGCGAAUAUAAGUUG--GUAACCAAUGCUCACUGAAAAAACAUGCAUAUUUAUGCAA
...............((((..(((((((((((.....)))))))))))....((((--(...)))))))))............(((((....))))). ( -22.60)
>consensus
GAUGAAAUUAAAUAAGGGCCAAUUUGUGACUUCGAUUAGGUCGCGAAUAUAAGUUG__GUAACCAGUGCUCACUGGAAACACAUGCAUAUUUAUGCAA
...............((((..(((((((((((.....)))))))))))....((((...))))....))))............(((((....))))). (-18.54 = -18.58 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:24 2006