Locus 3367

Sequence ID 3R_DroMel_CAF1
Location 9,099,184 – 9,099,286
Length 102
Max. P 0.781705
window5416

overview

Window 6

Location 9,099,184 – 9,099,286
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.75
Mean single sequence MFE -25.47
Consensus MFE -21.75
Energy contribution -21.92
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.85
SVM decision value 0.56
SVM RNA-class probability 0.781705
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9099184 102 + 27905053
--------AUAAGCAUAGGCAGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------CACC
--------....((((((((...-.)).).)))))(((((((((((((.((((...........)))).))))))))))...(((...(((.......)))))).))---------)... ( -25.80)
>DroSec_CAF1 8887 105 + 1
GCC-----AUAUACAUAGUCAGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------CACC
(((-----((...(((.....(.-((((....)))).)((((((((((.((((...........)))).))))))))))..)))...)))))...............---------.... ( -25.00)
>DroSim_CAF1 10049 105 + 1
GCC-----AUAUACAUAGUCAGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------CACC
(((-----((...(((.....(.-((((....)))).)((((((((((.((((...........)))).))))))))))..)))...)))))...............---------.... ( -25.00)
>DroEre_CAF1 9830 97 + 1
ACC-----AAGU--------AGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------GACC
...-----....--------.((-(((.(((.(((((.((((((((((.((((...........)))).))))))))))..))))).))))).......(.....).---------))). ( -22.90)
>DroYak_CAF1 9160 97 + 1
ACC-----AUGU--------AGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------CACC
...-----....--------.((-(...(((.(((((.((((((((((.((((...........)))).))))))))))..))))).)))((.........))..))---------)... ( -23.60)
>DroAna_CAF1 12380 118 + 1
UACAUUACAUAUGUAUGUGUGGUACGCA-GUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAA-AACCAGCAAGCGGCAACUCGCAGC
(((((.....)))))((((.(...(((.-...(((((.((((((((((.((((...........)))).))))))))))..)))))..(((....-..)))....)))....).)))).. ( -30.50)
>consensus
ACC_____AUAU_CAUAG_CAGU_CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA_________CACC
.........................((.(((.(((((.((((((((((.((((...........)))).))))))))))..))))).)))))............................ (-21.75 = -21.92 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:21 2006