Locus 3366

Sequence ID 3R_DroMel_CAF1
Location 9,098,544 – 9,098,635
Length 91
Max. P 0.812412
window5415

overview

Window 5

Location 9,098,544 – 9,098,635
Length 91
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 88.87
Mean single sequence MFE -23.08
Consensus MFE -19.96
Energy contribution -20.48
Covariance contribution 0.52
Combinations/Pair 1.11
Mean z-score -1.54
Structure conservation index 0.86
SVM decision value 0.65
SVM RNA-class probability 0.812412
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9098544 91 - 27905053
AAAAA----------AACCGAUCCGAUCCGAAAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGCUUCGCUGCCGACUAUUUGGCAUUA
.....----------....(((((((((.(((((....(((.........))).....)))))..)))))))))........((((((....))))))... ( -20.30)
>DroSec_CAF1 8240 101 - 1
AAAAAAAAAAAACCGAACCGAUCCGAUCCGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGCUUCGCUGCCGACUAUUUGGCAUUA
.............(((((.(((((((((.(((((....(((.........))).....)))))..))))))))).).)))).((((((....))))))... ( -23.70)
>DroSim_CAF1 9392 101 - 1
AAAAAAAAAAAACCGAACCGAUCCGAUCCGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGCUUCGCUGCCGACUAUUUGGCAUUA
.............(((((.(((((((((.(((((....(((.........))).....)))))..))))))))).).)))).((((((....))))))... ( -23.70)
>DroEre_CAF1 9211 99 - 1
AAAAU-CCGA-ACCGAUUCGAACCGACCGGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGCUCUGCUUCGCUGCCGACUAUUUGGCAUUA
.....-....-..(((..(((.((((((((((((....(((.........))).....)))))).)))))).)).)..))).((((((....))))))... ( -24.70)
>DroYak_CAF1 8519 97 - 1
---AU-CCGAAACCGAACCGAACCGAUCCGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGUUUCGCUGCCGACUAUUUGGCAUUA
---..-.((((((.((.((.(((((((..(((((..(.((.....)).)..)))))..)))....)))))).)).)))))).((((((....))))))... ( -23.00)
>consensus
AAAAA_AAAAAACCGAACCGAUCCGAUCCGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGCUUCGCUGCCGACUAUUUGGCAUUA
.............(((((.(((((((((.(((((....(((.........))).....)))))..))))))))).).)))).((((((....))))))... (-19.96 = -20.48 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:20 2006