Locus 3363

Sequence ID 3R_DroMel_CAF1
Location 9,090,369 – 9,090,489
Length 120
Max. P 0.926487
window5412

overview

Window 2

Location 9,090,369 – 9,090,489
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.53
Mean single sequence MFE -34.31
Consensus MFE -15.08
Energy contribution -16.67
Covariance contribution 1.59
Combinations/Pair 1.26
Mean z-score -2.19
Structure conservation index 0.44
SVM decision value 1.18
SVM RNA-class probability 0.926487
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9090369 120 - 27905053
AUCCCGCAUCGGGUGCUUGUCCUCCUCCACCACCAUGGCCACAUCCCCAUCGUCAUCAUCCACCACGAUGACCAUGGAGGUCUCCACUUCCUCGAUGUGAUCCGGAUCCACCAGAGCACC
...........(((((((.......(((.((.....)).((((((..(((.((((((.........)))))).)))((((.........))))))))))....))).......))))))) ( -36.14)
>DroSec_CAF1 74 120 - 1
AUCCCGCAUCGGGUGCUUGUCCUCCUCCACCUCCAUGGCCGUAUCCCCAUCGUCAUCAUCCACCACGAUGACUAUGGGGGUCUCCGCUUCCUCGAUGUGAUCCGGAUCCACCACAGCACC
.....((....((((...((((.....(((.((...(((.(.((((((((.((((((.........)))))).))))))))..).))).....)).)))....)))).))))...))... ( -37.70)
>DroSim_CAF1 72 120 - 1
AUCCCGCAUCGGGUGCUUGUCCUCCUCCACCACCAUGGGCGUAUCCCCAUCGUCAUCAUCCACCACGAUGACUAUGGGGGUCUCCACUUCCUCGAUGUGAUCCGGAUCCACCACAGCACC
(((((((((((((((..((........)).)))).((((.(.((((((((.((((((.........)))))).)))))))))))))......)))))))....))))............. ( -39.60)
>DroEre_CAF1 632 120 - 1
AUCGGGCAUCGAGUGCACGUCCUCCUCCACCACAAUGGCCGCGUCCCCCUCGUCAUCAUCCACCAGGAUGACCAUGGGGGUCUCCACUUCCUCGGCGGGAUCCGGAGCCACCACAGCACC
.(((.....)))((((..........(((......)))(((.(((((((((((..((((((....))))))..))))))(((...........)))))))).)))..........)))). ( -36.90)
>DroYak_CAF1 72 102 - 1
AUCCGGCAUCGGGUGCUCGUCCUCCUC------------------CCCCUCGUCAUCAUCUACCACGAUGACCAUGGGGGUCUCCACUUCCUCGACGGAAUCCGGAGCCACCGCAGCACC
..(((....)))(((((((..((((.(------------------((((..((((((.........))))))...))))).......((((.....))))...))))....)).))))). ( -36.20)
>DroAna_CAF1 440 102 - 1
GCCGUG---CGACAGUCUAUCUUCGUCC---------GCCGGAUCGUCGUCAUCGUCAUCCACUAAAAUCACCAUCGG---CACCCUUUCCUCUGGCAACUCC---UCUGCUAUAACAGA
((((((---.(((...........))))---------)).((((.(.((....)).)))))...............))---)...........(((((.....---..)))))....... ( -19.30)
>consensus
AUCCCGCAUCGGGUGCUUGUCCUCCUCCACCACCAUGGCCGCAUCCCCAUCGUCAUCAUCCACCACGAUGACCAUGGGGGUCUCCACUUCCUCGAUGUGAUCCGGAUCCACCACAGCACC
...........(((((............................((((((.((((((.........)))))).))))))........................((.....))...))))) (-15.08 = -16.67 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:17 2006