Locus 3362

Sequence ID 3R_DroMel_CAF1
Location 9,082,906 – 9,083,011
Length 105
Max. P 0.730935
window5411

overview

Window 1

Location 9,082,906 – 9,083,011
Length 105
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 82.81
Mean single sequence MFE -25.01
Consensus MFE -15.44
Energy contribution -16.32
Covariance contribution 0.88
Combinations/Pair 1.08
Mean z-score -2.08
Structure conservation index 0.62
SVM decision value 0.42
SVM RNA-class probability 0.730935
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9082906 105 - 27905053
UUCGCACACGUUCUGAAUUCUGAAUGCUGAGCAGAAUUAAGCCUGCCGUUUUUU-UCAGUGCAUUGGGCAUCGCACUUUUUCACAUCUUUUGAGUAUUGUGUGCCC
...((((.(((((........)))))..(.((((........))))).......-...))))...(((((.((((....((((.......))))...))))))))) ( -27.60)
>DroSec_CAF1 197095 96 - 1
UUCGCACACUUUCUGAAUUCAAAAUG--------AAUUAAGCCUGCC-UUUUUU-UCAGUGCAUUGGGCAUCGCACUUUUUCACAUCUUUUGAGUAUUGUGUGUCC
...((((((.......((((((((((--------((....((.((((-(.....-..........)))))..)).....))))....))))))))...)))))).. ( -19.06)
>DroSim_CAF1 200577 104 - 1
UUCGCACACUUUCUGAAUUCUGAAUGCUUAGCAGAACUAAGCCUUUC-UUUUUU-UCAGUGCAUUGGGCAUCGCACUUUUUCACAUCUUUUGAGUAUUGUGUGCCC
...((((......((((....(((.((((((.....))))))..)))-.....)-)))))))...(((((.((((....((((.......))))...))))))))) ( -27.00)
>DroEre_CAF1 203644 95 - 1
---------AUUACAAAUUCUGAAUGCUAGGCAGAAUUUAGCCUGCCACUUUUU-UCAGUGCAUUGGGCAUCGCAUUU-UUCACUUCUUUCGAGUAUUGUGUGCUC
---------.............(((((..(((((........)))))(((....-..))))))))(((((.((((...-(((.........)))...))))))))) ( -22.50)
>DroYak_CAF1 212562 106 - 1
AUCGCACACAUUGUGAAUUCUGAAUGCUACGCAGAAUUUAGCCUGCCAAUUUUUGUCAGUGCAUUGGGCAUCGCAUUUUUUCACUUCUGUUGAGUAUUGUGUGCCC
...(((((((..(((((....((((((...((((........))))............((((.....)))).)))))).)))))(((....)))...))))))).. ( -28.90)
>consensus
UUCGCACACAUUCUGAAUUCUGAAUGCUAAGCAGAAUUAAGCCUGCC_UUUUUU_UCAGUGCAUUGGGCAUCGCACUUUUUCACAUCUUUUGAGUAUUGUGUGCCC
...............(((((((.........)))))))..(((((...........))).))...(((((.((((....((((.......))))...))))))))) (-15.44 = -16.32 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:16 2006