Locus 3358

Sequence ID 3R_DroMel_CAF1
Location 9,059,756 – 9,059,861
Length 105
Max. P 0.798802
window5405

overview

Window 5

Location 9,059,756 – 9,059,861
Length 105
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 73.61
Mean single sequence MFE -35.77
Consensus MFE -23.43
Energy contribution -23.18
Covariance contribution -0.25
Combinations/Pair 1.15
Mean z-score -1.30
Structure conservation index 0.66
SVM decision value 0.61
SVM RNA-class probability 0.798802
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9059756 105 - 27905053
-----ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAAGC--AGAGCCCGACUGUGGCCAACUCAAGUUGAAUGGUUAAGUGCUUAGCCCUCAGCUUUCAG---UUCUCAGUUCU
-----.(((((((((..((((....))))))))).)))).--(((((..(((((.(((((((....))))...((((((....))))))....)))..)))---))....))))) ( -35.90)
>DroPse_CAF1 179221 98 - 1
UGGCCACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAUGC--AAAGCCCGAUUGCGGCCAGCUUGGGCUGAGGGGUUAAGUGGUCCAUCCCGGUCUUACG---------------
(((((((((((((.((.((((....)))).(((((((.((--...(((.......)))..)).))))))).)))))))))))).))).............--------------- ( -40.60)
>DroEre_CAF1 180470 86 - 1
-----ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAAGC--AGAGCCCGACUGCGGCCAACUCAAGUUGAAUGGUUAAGUGGUUAGCCCUCA----------------------
-----.(((((((((..((((....))))))))).)))).--.(((.(..((..(.((((..((.....)).))))...)..))..)..))).---------------------- ( -28.80)
>DroYak_CAF1 186921 98 - 1
-----ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAAGC--AGAGCCCGACUGUGGCCAACUCAAGUUGAAUGGUUAAGUGGUUAGCCCUCAGCUUUCAG---U-------UCU
-----.(((((((((..((((....))))))))).)))).--.(.((((....).))))((((.(((((((..((((((....)))))).)))))))..))---)-------).. ( -32.50)
>DroAna_CAF1 186894 110 - 1
-----ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAGGCCAGGAACCCGACUGCGGCCACCUUAAGUUGAACGGUUAAGUGGUCAGACCGAUGCCUCCUGGACUUUCCAGUUUA
-----.(((((((((..((((....))))))))).))))((((((...(((((..((...))...)))))...(((....(((.....)))..)))))))))............. ( -36.70)
>DroPer_CAF1 180321 98 - 1
UGGCCACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAUGC--AAAGCCCGAUUGCGGCCAACUUGGGCUGAAGGGCUAAGUGGUACACCCCGGUCUGACG---------------
..(((((((((((((..((((....)))))))))).....--..(((((.....(((((......)))))..))))))))))))................--------------- ( -40.10)
>consensus
_____ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAAGC__AGAGCCCGACUGCGGCCAACUCAAGUUGAAUGGUUAAGUGGUUAGCCCUCAGCUUACA_______________
.....(((((((((((.((((....))))((((.((..((.....))..)))))))))((((....))))...)))))))).................................. (-23.43 = -23.18 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:10 2006