Locus 3357

Sequence ID 3R_DroMel_CAF1
Location 9,058,829 – 9,058,923
Length 94
Max. P 0.514932
window5404

overview

Window 4

Location 9,058,829 – 9,058,923
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 89.32
Mean single sequence MFE -18.60
Consensus MFE -13.89
Energy contribution -14.00
Covariance contribution 0.11
Combinations/Pair 1.08
Mean z-score -2.11
Structure conservation index 0.75
SVM decision value -0.04
SVM RNA-class probability 0.514932
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9058829 94 + 27905053
AAUGAGGUGCUUGUGCGCUGCAAAAAAGCAAAAGAAUCCAAAUAAGAAAUUGAACAUGGCUAGAAAAGCCAAAGAAAAUGCCGUGAAAAUGGGA
.....(((((....)))))((......)).......((((..(((....)))..((((((...................))))))....)))). ( -19.01)
>DroEre_CAF1 179364 93 + 1
AACGAGGUGCUUGUGCGCUGCAAACAAGCAAAAGAGUACAAACAAUAAAUUGGAUAAGGUUAGAAAAGCCAAGGAAAG-GCCGUGAAAAUAGGA
.(((..((((((.(((..((....)).)))...))))))............................(((.......)-))))).......... ( -15.80)
>DroYak_CAF1 185845 93 + 1
AACGAGGUGCUUGUGCGCUGCAAACAAGCAAAAGAGUUCAAACAAUAAAUUGGAUAGGGCUAGAAAAGCCAAGGAAAA-GCCGUGAAAAUGGGA
.......(((((((.........))))))).....((((((........))))))..((((.....))))........-.((((....)))).. ( -21.00)
>consensus
AACGAGGUGCUUGUGCGCUGCAAACAAGCAAAAGAGUACAAACAAUAAAUUGGAUAAGGCUAGAAAAGCCAAGGAAAA_GCCGUGAAAAUGGGA
.....(((((((((.........))))))............................((((.....)))).........)))............ (-13.89 = -14.00 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:09 2006