Locus 3354

Sequence ID 3R_DroMel_CAF1
Location 9,044,903 – 9,045,004
Length 101
Max. P 0.829117
window5401

overview

Window 1

Location 9,044,903 – 9,045,004
Length 101
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 91.07
Mean single sequence MFE -21.38
Consensus MFE -16.46
Energy contribution -16.86
Covariance contribution 0.40
Combinations/Pair 1.12
Mean z-score -1.91
Structure conservation index 0.77
SVM decision value 0.71
SVM RNA-class probability 0.829117
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9044903 101 - 27905053
AGUUCUUUUAACGACCAUGUUCAAAUGUUUAAAGAUAGGAUCAAAAUUUAUUAUGUUCAUUGGAAUUU----UUUGGUGACUUAAAUGAGUUU-UUUGAGCAGGUU
............((((.(((((((.((((....)))).....((((((((((....((((..((....----))..))))....)))))))))-)))))))))))) ( -20.70)
>DroSec_CAF1 158718 102 - 1
AGUUCUUUUAACGACCAUGUUUAAAUGUUUAAAGAUAGGAUCAAAAUUUAUUAUGGUCAUUAGAAUUU----UUUGGUGACUUAAAUGAGUUAAGUUUAACAGGUU
.(((..((((((((((((.(((((....))))).)).)).)).....(((((..((((((((((....----))))))))))..)))))))))))...)))..... ( -20.00)
>DroSim_CAF1 162141 101 - 1
AGUUCUUUUAACGACCAUGUUCAAAUGUUUAAAGAUAGGAUCAAAAUUUAUUAUGGUCAUUAGAAUUU----UUUGGUGACUUAAAUGAGUUU-UUUGAACAGGUU
............((((.(((((((.((((....)))).....((((((((((..((((((((((....----))))))))))..)))))))))-)))))))))))) ( -25.00)
>DroEre_CAF1 165438 105 - 1
AGUUCUUUUACCGCCCAUGUUCAUAUAUUUAAAGAUACGAUCAAAAUUUAUUAUGUUCAUUAGAAUUUAGAAUCUGGUGACUUAAAUGAGUUU-UUCGAACAGGUU
..............((.(((((...((((....)))).((..((((((((((....((((((((........))))))))....)))))))))-)))))))))).. ( -19.00)
>DroYak_CAF1 171954 101 - 1
AGUUCUUUUAAUGACCAUGUUCAAAUAUUUAAAGAUACGAUCAAAAUUUAUUAUGUUCAUUAGACUUU----UCUGGUGACUUAAAUGAGUUU-UUUGAACAGGUU
............((((.(((((((.........(((...)))((((((((((....((((((((....----))))))))....)))))))))-)))))))))))) ( -22.20)
>consensus
AGUUCUUUUAACGACCAUGUUCAAAUGUUUAAAGAUAGGAUCAAAAUUUAUUAUGUUCAUUAGAAUUU____UUUGGUGACUUAAAUGAGUUU_UUUGAACAGGUU
............((((.((((((((((((....))))......(((((((((....((((((((........))))))))....))))))))).)))))))))))) (-16.46 = -16.86 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:07 2006