Locus 3353

Sequence ID 3R_DroMel_CAF1
Location 9,043,904 – 9,044,005
Length 101
Max. P 0.539161
window5400

overview

Window 0

Location 9,043,904 – 9,044,005
Length 101
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.62
Mean single sequence MFE -32.23
Consensus MFE -20.68
Energy contribution -20.78
Covariance contribution 0.10
Combinations/Pair 1.10
Mean z-score -1.43
Structure conservation index 0.64
SVM decision value 0.01
SVM RNA-class probability 0.539161
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9043904 101 - 27905053
GGC--------GCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCUGCGCAAAAUAAAUACAUACAGC-----GAUCGGACCCAUAAUG
.((--------(((....))).(((.(((.(.(((((..(((((((.......)))))))))))).).--))).)))................))-----................ ( -32.20)
>DroVir_CAF1 198091 88 - 1
-----------------------CUGCGCGGCGCGAUAAAGAGCAUUGGAAUUAUGUUCUGUCGCCAGUCGCUGCGCUAAAUAAAUACAUUCAGC-----GAUGUCGGCCAUAAUG
-----------------------..((.(((((((((..(((((((.......))))))))))))..(((((((.................))))-----)))))))))....... ( -27.53)
>DroPse_CAF1 162265 106 - 1
AGG--------GCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCCGGGCAGAAUAAAUACAUACGGCAUACAGAUUGGGUCCAUAAUG
.((--------((.(((((((..(((..(((.(((((..(((((((.......)))))))))))))))--.))).))..........(....)))).......)).))))...... ( -31.31)
>DroWil_CAF1 162330 101 - 1
AUG--------GCGCAUGCGCAGCGGUGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCUGCGCAAAAUAAACACAUACAGC-----GAACUCGCCCAUAAUG
(((--------(....((((((((....(((.(((((..(((((((.......)))))))))))))))--))))))))...............((-----(....))))))).... ( -36.10)
>DroAna_CAF1 169130 109 - 1
CGAAUCCAAUGGCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCUGCGCAAAAUAAAUACAUACAGC-----GAUCGGGCCCAUAAUG
........((((.((.((((((((....(((.(((((..(((((((.......)))))))))))))))--))))))))................(-----....).)))))).... ( -34.90)
>DroPer_CAF1 163484 106 - 1
AGG--------GCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCCGGGCAGAAUAAAUACAUACGGCAUACAGAUUGGGUCCAUAAUG
.((--------((.(((((((..(((..(((.(((((..(((((((.......)))))))))))))))--.))).))..........(....)))).......)).))))...... ( -31.31)
>consensus
AGG________GCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG__GCUGCGCAAAAUAAAUACAUACAGC_____GAUCGGGCCCAUAAUG
...........(((....)))....(.((((((((((..(((((((.......)))))))))))).....))))).)....................................... (-20.68 = -20.78 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:06 2006