Locus 3352

Sequence ID 3R_DroMel_CAF1
Location 9,042,421 – 9,042,524
Length 103
Max. P 0.616288
window5399

overview

Window 9

Location 9,042,421 – 9,042,524
Length 103
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 87.84
Mean single sequence MFE -25.02
Consensus MFE -17.36
Energy contribution -17.96
Covariance contribution 0.60
Combinations/Pair 1.07
Mean z-score -1.95
Structure conservation index 0.69
SVM decision value 0.17
SVM RNA-class probability 0.616288
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9042421 103 - 27905053
AAAUAUAGAAAUAGCAUGUAUACUUUGCAUGCG----------GCGAAACCCGUUUUUUUCUUUGAGGCCAUUAAAUGGGUGACUAUUUUUGGAUUGCUAUAAACAUUAUCUA
.....((((....(((((((.....)))))))(----------((((..((((..........)).))(((..((((((....)))))).))).)))))..........)))) ( -25.40)
>DroSec_CAF1 156251 100 - 1
AAAUAUAGAAAUAGCAUGUAUACUUUGCAUGCG----------GCGAAAC--GU-UUUUUCUUUGAGGCCAUUAAAUGGGUGACUAUUUUUGGAUUGCUAUAAACAUUAUCUA
.....((((....(((((((.....)))))))(----------((((((.--..-..)))).......(((..((((((....)))))).)))...)))..........)))) ( -24.40)
>DroSim_CAF1 159662 102 - 1
AAAUAUAGAAAUAGCAUGUAUACUUUGCAUGCG----------GCGAAACCCGU-UUUUUCUUUGAGGCCAUUAAAUGGGUGACUAUUUUUGGAUUGCUAUAAACAUUAUCUA
.....((((....(((((((.....)))))))(----------((((..((((.-........)).))(((..((((((....)))))).))).)))))..........)))) ( -25.50)
>DroEre_CAF1 163001 112 - 1
AAAUAUAGAAAUAGCAUGUGUACUUUGCAUGCGGGGUUUCAAGGCGAAACUUGU-UUAUUCUUUGAGGCCAUUAAAUUGGUACCUAUUUUUGGAUCGCUAUAAACAUUAUCUA
...(((((.....(((((((.....)))))))..((((((((((..(((....)-))...))))))))))........(((.((.......))))).)))))........... ( -26.10)
>DroYak_CAF1 169584 112 - 1
AAAUAUAUAAAUAGCUUUUAUACUUUGCAUGCGGGGUUUCAAGGCGAAACUCGU-UUAUUCUUCGAGGCCAAUAAAUUGGUGACUAUUUUUGGAUCGCUAUAAACAUAAUCUA
.............(((((...((((((....))))))...))))).......((-((((....(((..((((.((((.(....).)))))))).)))..))))))........ ( -23.70)
>consensus
AAAUAUAGAAAUAGCAUGUAUACUUUGCAUGCG__________GCGAAACCCGU_UUUUUCUUUGAGGCCAUUAAAUGGGUGACUAUUUUUGGAUUGCUAUAAACAUUAUCUA
.....((((....(((((((.....)))))))...........((((...........(((...))).(((..((((((....)))))).))).))))...........)))) (-17.36 = -17.96 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:04 2006