Locus 335

Sequence ID 3R_DroMel_CAF1
Location 1,280,265 – 1,280,364
Length 99
Max. P 0.685603
window560

overview

Window 0

Location 1,280,265 – 1,280,364
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 82.50
Mean single sequence MFE -23.90
Consensus MFE -16.14
Energy contribution -16.20
Covariance contribution 0.06
Combinations/Pair 1.12
Mean z-score -2.01
Structure conservation index 0.68
SVM decision value 0.32
SVM RNA-class probability 0.685603
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1280265 99 + 27905053
CGGAAAUAUGCUGAUAAAAAACAAACACCCGCCCAAUUGGCACGGCCAUCGCAAUCGCAAUGGCAAUGGGAAUCCGCCAGAAGCGAUUUCCGGCUGACA
(((((((.((((...............((((((.....)))...(((((.((....)).)))))...)))..((.....)))))))))))))....... ( -30.00)
>DroPse_CAF1 52063 78 + 1
CGAAAAUAUGCUGAUGAAAAACAAACACUCGACCAAUUGGCAUGGCAAUCC---------------------UUUGCCAGAAGCGAUUUCCGGCUGAUA
((.((((.((((..................(.((....))).((((((...---------------------.))))))..)))))))).))....... ( -14.80)
>DroSec_CAF1 50688 93 + 1
CGGAAAUAUGCUGAUAUAAAACCAACAAUCGCUCAAUUGGCACGGCCAUCGCAAUCGCAAUGGCA------AUCCGCCAGAAGCGAUUUCCGGCUGACA
(((((((((....))))..........((((((...(((((...(((((.((....)).))))).------....))))).)))))))))))....... ( -27.80)
>DroSim_CAF1 48215 93 + 1
CGGAAAUAUGCUGAUAAAAAACAAACAACCGCCCAAUUGGCACGGCCAUCGCAAUCGCAAUGGCA------AUCCGCCAGAAGCGAUUUCCGGCUGACA
(((((((.((((..................(((.....)))...(((((.((....)).))))).------..........)))))))))))....... ( -26.30)
>DroEre_CAF1 50109 86 + 1
CGGAAAUAUGCUGAUAAAAAACAAACACCCGCCCAAUUGGCACGGUAAUCGC-UUCG------CC------AUCCGCCAGAAGCGAUUUCCGGCUGACA
(((...........................(((.....))).(((.((((((-((((------(.------....))..))))))))).))).)))... ( -23.10)
>DroYak_CAF1 66574 87 + 1
CGGAAAUAUGCUGUAAAAAAACAAACACCCGCCUAAUUGGCACGGCAAUCGUAAUCG------CC------AUCCGCCAGAAGCGAUUUCCGGCUGACA
(((((((.((((..................(((.....)))..(((..........)------))------..........)))))))))))....... ( -21.40)
>consensus
CGGAAAUAUGCUGAUAAAAAACAAACACCCGCCCAAUUGGCACGGCAAUCGCAAUCG______CA______AUCCGCCAGAAGCGAUUUCCGGCUGACA
(((((((.((((..................(((.....)))..(((.............................)))...)))))))))))....... (-16.14 = -16.20 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:41 2006