| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,024,657 – 9,024,753 |
| Length | 96 |
| Max. P | 0.500000 |
| Location | 9,024,657 – 9,024,753 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 84.34 |
| Mean single sequence MFE | -19.02 |
| Consensus MFE | -12.98 |
| Energy contribution | -13.17 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.08 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9024657 96 - 27905053 CCAGCUGGGAAAACCCGAACUCUGCUUCCCAAUUUCCCUC-UUUCUAUAGCAA-AAAAAAAAAAAAAAAACGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((..............)))))).((((.(((-(((..((.((..-..................)).))..)))))).))))...)))). ( -16.09) >DroSec_CAF1 138624 85 - 1 CCAGCUGGGAAAACCAGAACUCUGCUUCCCAAUUUCCCUCUUUUCUAUCGCAA-A------------AAACGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((...(((....))).)))))).((((.((((((...((.((..-.------------.....)).))..)))))).))))...)))). ( -20.70) >DroSim_CAF1 141932 85 - 1 CCAGCUGGGAAAACCCGAACUCUGCUUCCCAAUUUCCCCCCUUUCUAUCGCAA-A------------AAAUGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((..............)))))).((((..((((((..((.((..-.------------.....)).))..)))))).))))...)))). ( -18.74) >DroYak_CAF1 151627 84 - 1 CCAGCUGGGAAAACCCGAACUCUGCUUCCCA--UUCCCCUUUCCCUGUCGUAGCA------------AGAGGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((..............))))))--(((((((((((((.(.......------------).))))......)))))).)))....)))). ( -20.54) >consensus CCAGCUGGGAAAACCCGAACUCUGCUUCCCAAUUUCCCCCUUUUCUAUCGCAA_A____________AAACGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((..............)))))).((((.((((((...((.((.....................)).))..)))))).))))...)))). (-12.98 = -13.17 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:00 2006