Locus 3345

Sequence ID 3R_DroMel_CAF1
Location 9,005,035 – 9,005,126
Length 91
Max. P 0.949197
window5386

overview

Window 6

Location 9,005,035 – 9,005,126
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 96.48
Mean single sequence MFE -19.80
Consensus MFE -18.86
Energy contribution -18.82
Covariance contribution -0.04
Combinations/Pair 1.12
Mean z-score -1.45
Structure conservation index 0.95
SVM decision value 1.39
SVM RNA-class probability 0.949197
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9005035 91 - 27905053
CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCCCUGCAGAAACCCAACAAGUUUCAUCUGCAGA
......((((((((.((..(.(((.((....)).))).)..)))))))))).........((((((((((.......)))...))))))). ( -21.70)
>DroSec_CAF1 119269 91 - 1
CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUUUCGAUAUUUUGGGACUUGCCACAUGUCCCUGUAGAAACCCAACAAGUUUCAUCUGCAGA
....((((((((.........)))))))).............(((((.........)))))(((((((((.......)))...)))))).. ( -18.40)
>DroSim_CAF1 122475 91 - 1
CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCCCUGUAGAAACCCAACAAGUUUCAUCUGCAGA
....((((((((.........)))))))).(((.(((.....(((((.........)))))....(((((.......)))))))).))).. ( -20.20)
>DroEre_CAF1 125147 91 - 1
CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCCCUGCAAAAGCCCAACAAGUUUCAGCUGCAGA
....((((((((.........))))))))..((.((.((((..((((((((...........)))..)))))...)))).)).))...... ( -18.40)
>DroYak_CAF1 130417 91 - 1
CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCUCUGUAGAAGCCCAACAAGUUUCAUCUGCAGA
....((((((((.........)))))))).(((.(((..((((((((((.(.(((......))).)))))))..))))....))).))).. ( -20.30)
>consensus
CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCCCUGUAGAAACCCAACAAGUUUCAUCUGCAGA
......((((((((.((..(.(((.((....)).))).)..)))))))))).........((((((((((.......)))...))))))). (-18.86 = -18.82 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:52 2006