Locus 3344

Sequence ID 3R_DroMel_CAF1
Location 9,002,140 – 9,002,238
Length 98
Max. P 0.782138
window5385

overview

Window 5

Location 9,002,140 – 9,002,238
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 92.20
Mean single sequence MFE -25.97
Consensus MFE -21.13
Energy contribution -21.38
Covariance contribution 0.25
Combinations/Pair 1.12
Mean z-score -2.41
Structure conservation index 0.81
SVM decision value 0.56
SVM RNA-class probability 0.782138
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9002140 98 - 27905053
CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCUCUGUGCAAU-GGAGUUUAUUUCAUAUUUGCAGCCAACCA
..(((((((..(((.(((.((((((((.....)))))))).)))))))))(((.....((((((...))-)))).....)))......))))....... ( -26.80)
>DroSec_CAF1 116358 98 - 1
CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCUCUGUGCAGU-GGAGUUUAUUUCAUAUUUGCAGCCAACCA
..(((((((..(((.(((.((((((((.....)))))))).)))))))))(((.....((((.......-)))).....)))......))))....... ( -26.70)
>DroSim_CAF1 119560 98 - 1
CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCUCUGUGCAGU-GGAGUUUAUUUCAUAUUUGCAGCCAACCA
..(((((((..(((.(((.((((((((.....)))))))).)))))))))(((.....((((.......-)))).....)))......))))....... ( -26.70)
>DroEre_CAF1 122291 98 - 1
CCCAACGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCACUGUGCAGU-GGAGCUUAUUUCAUAUUUGCAGCCAACCA
.....((((..(((.(((.((((((((.....)))))))).))))))))))......(((((....)))-)).((..((.....))..))......... ( -24.40)
>DroYak_CAF1 127515 98 - 1
CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCACUGUGCAGU-GGAGUUUAUUUCAUAUUUGCAGCCAACCA
..(((((((..(((.(((.((((((((.....)))))))).)))))))))((((...(((((....)))-)).))))...........))))....... ( -28.60)
>DroAna_CAF1 127492 96 - 1
GCCUCCGGCAACUGUUCUCGCAACAUUAUUAAAAUGUUGUCAGGAAUUCCGUACAAGUCGCUACGCAGUUGCAGUAUAUCUCAUAUUUGCAA--AACC-
((.....(((((((((((.((((((((.....)))))))).))))....((((........)))))))))))(((((.....))))).))..--....- ( -22.60)
>consensus
CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCUCUGUGCAGU_GGAGUUUAUUUCAUAUUUGCAGCCAACCA
.....(((((..((.(((.((((((((.....)))))))).))))))))))............(((((...(((.....)))....)))))........ (-21.13 = -21.38 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:51 2006