| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,001,518 – 9,001,614 |
| Length | 96 |
| Max. P | 0.620675 |
| Location | 9,001,518 – 9,001,614 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.22 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -16.40 |
| Energy contribution | -16.35 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9001518 96 + 27905053 ------------------------UCCAAAAAAGCGGGCAACAAUGAAGCCUUAAGUGGACUUUUAUUGACUUUAAGUCAGAACCAAUUUCGGGAAUUUAUCGAACAGAGUCCGCCGAGC ------------------------.........((((((.........))))...(((((((((..(((((.....))))).......(((((.......))))).)))))))))...)) ( -23.20) >DroVir_CAF1 142620 90 + 1 ------------------------GC------AACGGACAACAAUGAAGCCUUAAGUGGACUUUUAUUGACUUUUAGUCAAAACGAAUUUCGACAAUUUAUCGAACACACUUCGCCGCGU ------------------------..------..(((........((((((......)).))))..(((((.....)))))..((((.(((((.......))))).....)))))))... ( -14.30) >DroGri_CAF1 129423 91 + 1 ---------------A--------GC------AGCGGACAACAAUGUAGCCUUAAGUGGACUUUUAUUGACUUUUAGUCAAAACGAAUUUCGACAAUUUAUCGAACACAGUUCGCCGCGU ---------------.--------((------.((((((.....(((((((......)).))....(((((.....))))).)))...(((((.......)))))....)))))).)).. ( -21.30) >DroWil_CAF1 120087 120 + 1 UUCAGACAGCUAGCUAGCUGGAUGGCAAGCAAAGCGGGCAACAAUGAAGCCUUAAGUGGACUUUUAUUGACUUUUAGUCAAAACGAAUUUCGAGAAUUUAUCGAACACAGCUCGCCGGGC .(((..(((((....)))))..)))...((...((((((......((((((......)).))))..(((((.....))))).......(((((.......)))))....))))))...)) ( -33.30) >DroMoj_CAF1 155181 90 + 1 ------------------------GC------UGCGGACAACAAUGAAGCCUUAAGUGGACUUUUAUUGACUUUUAGUCAAAACGAAUUUCGACAAUUUAUCGAACACAGUUCGCCGCGU ------------------------((------.((((((......((((((......)).))))..(((((.....))))).......(((((.......)))))....)))))).)).. ( -22.80) >DroAna_CAF1 126817 94 + 1 ------------------------UUCCG--AAGAGGGCAACAAUGAAGCCUUAAGUGGACUUUUAUUGACUUUAAGUCAGAACGAAUUCGGGGAAUUUAUCGAAUACAGUCCGCCGGGC ------------------------.((((--...(((((.........)))))..(((((((....(((((.....)))))...(.((((((........)))))).)))))))))))). ( -28.00) >consensus ________________________GC______AGCGGACAACAAUGAAGCCUUAAGUGGACUUUUAUUGACUUUUAGUCAAAACGAAUUUCGACAAUUUAUCGAACACAGUUCGCCGCGC .................................((((((......((((((......)).))))..(((((.....))))).......(((((.......)))))....))))))..... (-16.40 = -16.35 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:50 2006